Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6614g00002 ATGATGGGATTCAACAGAAACCTCTTCTGGCTTTCTGCCTTTGTCATTTTTCTCTTTTCTGTCTCCTTTATTTTCTATTGCACTTCACCTTCCCCCAGCGATTACACAGCCATTGGTCCTCACGATAGTTTCAGTTTCCAGCTTGGTATATTTAGTGGCGCTCAAGACTTGGTATCTCTGATAACAAGTATAGCTAGGAGGAGACACCATCACCACCATCATCATCATCATAAGGAAAAATGTGAAGGGGCCAAGTGGGATTCCAGGCTTATTCAAGACTATAACGTGAGTCTTGTTTTCACGGTTGATTTAAAGGGCTGTGCTAACTTCAGTAGCGTTCAAAAAGCTGTTGATGCTGTTCCTGAATCTAGCTCTGATACCACCCTTATCATAATCGATTCTGGTACATACAGGGAGAAGGTAGCTGTGCAAGCCAACAAAACAAACTTAATAATTCAAGGTCAAGGATATCTGAATACAATCATAGAATGGAACGACACCGCCAATTCCACTGGCGGTACTTCCTACAGCTACTCCTTTGCCATCTTTGCTTCTAAGTTCACTGCTTACAACATCAGCTTTAAGAACACGGCTCCTCCACCGTCACCAGGAGCGGTGGGGGCACAAGCAGTGGCACTGAGAGTCACCGGTGATCAAGCAGCCTTCTATGGATGTGGATTTTATGGTGCACAGGATACACTGAATGATGATGGTGGAAGACATTATTTCAAAGAATGCTTAATCCAAGGATCCATTGATTTCATATTTGGAAATGGTAGATCACTTTATGAGGATTGTAGCATAAACTGTGTAGCAAAAGCAGAGAAGGATGAGATTAGTGGGTCGATCACTGCTCAAGGGAGGCAATCGATGGATGAAGAAAGTGGGTTTTCCTTTGTGAATTGTAGCATCGTTGGGAGTGGAAGAGTGTGGCTTGGAAGAGCTTGGGGACCCTATGCCACTGTCATCTTCTCGACAACATACATGTCTGATGTCGTAGCACCTGAAGGATGGAATGATTGGAGAGATCCCTCTAGAGACCGTTGCCATGGAGCTGGAGCAAATTATGCATCCAGAGTCTCTTATGCCAAGCAACTCAGGGATTACGAAGCAAACTCTTACATGGACATTTCCTACATTGATGGAAATGATTGGCTTCTTAATTATCGTCATAGTTATGTTAATCCTTCGTATATCTAA 1200 0.4333 MMGFNRNLFWLSAFVIFLFSVSFIFYCTSPSPSDYTAIGPHDSFSFQLGIFSGAQDLVSLITSIARRRHHHHHHHHHKEKCEGAKWDSRLIQDYNVSLVFTVDLKGCANFSSVQKAVDAVPESSSDTTLIIIDSGTYREKVAVQANKTNLIIQGQGYLNTIIEWNDTANSTGGTSYSYSFAIFASKFTAYNISFKNTAPPPSPGAVGAQAVALRVTGDQAAFYGCGFYGAQDTLNDDGGRHYFKECLIQGSIDFIFGNGRSLYEDCSINCVAKAEKDEISGSITAQGRQSMDEESGFSFVNCSIVGSGRVWLGRAWGPYATVIFSTTYMSDVVAPEGWNDWRDPSRDRCHGAGANYASRVSYAKQLRDYEANSYMDISYIDGNDWLLNYRHSYVNPSYI 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6614g00002 399 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 90 386 - -
Vium6614g00002 399 FunFam Pectinesterase 94 391 - -
Vium6614g00002 399 Gene3D - 94 395 IPR012334 -
Vium6614g00002 399 Pfam Pectinesterase 102 382 IPR000070 GO:0030599|GO:0042545
Vium6614g00002 399 ProSitePatterns Pectinesterase signature 2. 248 257 IPR033131 -
Vium6614g00002 399 SUPERFAMILY Pectin lyase-like 97 388 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6614g00002 Vium-Chr6614 4687 8460 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6614g00002 93 386 Carbohydrate Esterase AT1G05310 52.787 2.90e-111 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6614g00002 - - vun:114181275 714.146