Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6609g00005 ATGAGTGCGGCGTTTCAGTGTTTATCGTGTGCGCGGACTGAGCATTTCCTCCTCACACCAACCCAATCCCTCACTCTTCCTTTCCAACGAAAACTATTTTTCTGCTCTCTTCCTCTTTCCTCTCGCGCTCGTAACCTCTCTTCTTCAATCGTCGCTGCTTCTTCCAAAAAGAAAAAAAACAAGAAAAAACTGTCTCGTCATCATGTTACCGAGGGCGGCGAGGAGGACATGGACGCGTTTGAGCTTCTCTTCAACCAGCTCGAACAAGATCTCAAACGCGGTGATTTGTCAGATGATGATGGCGAAGATGAGATAACTGAAGAAGAGATGGCATTGCTTGAACGTGAGCTGGAAAATGCCTTGGGGGACTTTGATGCTGAATTGTTGAACTCGGATGTAATCGACGTAGAACTTGGTAGTGGTCCAGAGAATGATGATGAGGATGGTGATCGTGATGGTGATGATGGTGAGAGTCAGGATGGAGATGAAAACCCAGTGAACCTTAAGAATTGGCAGATGAAGAAATTGGCCAGAGCTTTGAAAGCCGGCCGCCGCAAAACAAGTATAAAAAATCTTGCTGCCGATCTTTGTCTTGATAGGGCTCTTGTTCTTCAGTTACTTCGTGAACCTCCTCCAAATCTCTTAATGATGAGTCTTACTATACCTGATGAACCTGCAACAACAGTAGTATCACTTGAAACTAAGCCCAGTGAGATTCTCCTTCAAGAAACAAGTATTGATCAAGTTGAATCTGAACCCGAGGCTAAAGTACCTGTTCATACCTTGCAACGTAATTGGTATGCTCAAAAGCGATTGAAGAAGGTCCATGTTGACACTCTGGAGAGAGTTTATAGGAAATCAAAACGACCTACTAATGCAATGATCAGCAGCATTGTACATGTAACAAACATTCCTCGAAAAAGAGTTGTTAAGTGGTTTGAAGACAAACGTGCTGAGGAGGGAGTTCCAGATCATCGTCTTCCTTACCAGCGCTATGTTCCTGAGACGGCTTGA 1014 0.4438 MSAAFQCLSCARTEHFLLTPTQSLTLPFQRKLFFCSLPLSSRARNLSSSIVAASSKKKKNKKKLSRHHVTEGGEEDMDAFELLFNQLEQDLKRGDLSDDDGEDEITEEEMALLERELENALGDFDAELLNSDVIDVELGSGPENDDEDGDRDGDDGESQDGDENPVNLKNWQMKKLARALKAGRRKTSIKNLAADLCLDRALVLQLLREPPPNLLMMSLTIPDEPATTVVSLETKPSEILLQETSIDQVESEPEAKVPVHTLQRNWYAQKRLKKVHVDTLERVYRKSKRPTNAMISSIVHVTNIPRKRVVKWFEDKRAEEGVPDHRLPYQRYVPETA 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6609g00005 337 MobiDBLite consensus disorder prediction 139 161 - -
Vium6609g00005 337 Pfam Homeodomain 272 319 IPR001356 GO:0003677
Vium6609g00005 337 Coils Coil 103 123 - -
Vium6609g00005 337 PANTHER ZINC-FINGERS AND HOMEOBOXES RELATED 34 330 - -
Vium6609g00005 337 Gene3D - 263 321 - -
Vium6609g00005 337 CDD homeodomain 269 318 IPR001356 GO:0003677
Vium6609g00005 337 SMART HOX_1 269 327 IPR001356 GO:0003677
Vium6609g00005 337 MobiDBLite consensus disorder prediction 136 169 - -
Vium6609g00005 337 SUPERFAMILY Homeodomain-like 265 326 IPR009057 -
Vium6609g00005 337 ProSiteProfiles 'Homeobox' domain profile. 263 323 IPR001356 GO:0003677
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vium6609g00005 Homeodomain 7.5e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6609g00005 - - gmx:100798718 473.396