Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6609g00001 ATGACGAAGCTCTTTTCCTTCCTAATATTTTCAAGCTTTTTTCTCAGACAAGTGAGCCTGGTTATTGGAGACGTTGGTACGGCTGCATCTTATGGACCACCATACATACCTACTGCTTGCGGGGGAAACAGGGCAGGGCAATTTCCTCCAGGAAATCTATTTGTGGCTGTGAATGAAGGGTTATGGGATAATGGAGCAGCGTGTGGAAGGAGATACAGAATAAGGTGTGTGAGTGGAAACAACAGACCATGCAAAGGTGGTAGCATCGATGTCAAAGTGGTAGATTCTTGTCCTGGCTCACCTTGTCCCAACAGCCTCCTCATGTCAAATGATGCCTTTGCAGCTATTTCACGCTTCCCTCATGCAAAAATCAACATTGAATATACCCAGTAA 393 0.4529 MTKLFSFLIFSSFFLRQVSLVIGDVGTAASYGPPYIPTACGGNRAGQFPPGNLFVAVNEGLWDNGAACGRRYRIRCVSGNNRPCKGGSIDVKVVDSCPGSPCPNSLLMSNDAFAAISRFPHAKINIEYTQ 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6609g00001 130 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 37 130 IPR007112 -
Vium6609g00001 130 SUPERFAMILY Barwin-like endoglucanases 22 130 IPR036908 -
Vium6609g00001 130 Pfam Lytic transglycolase 56 128 IPR009009 -
Vium6609g00001 130 CDD DPBB_EG45-like 24 129 - -
Vium6609g00001 130 Gene3D - 24 130 IPR036908 -
Vium6609g00001 130 PANTHER EG45-LIKE DOMAIN CONTAINING PROTEIN 3 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6609g00001 Vium-Chr6609 4099 4714 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6609g00001 14 118 Expansin Gene Family AT2G45110 30.769 9.28e-08 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6609g00001 - - ccaj:109795996 241.506