Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6603g00001 ATGCGTACAATTAAGGTTATTGTGGTTGTTAACTACGTTTATATGTACATAATAATGTGCAGGATGGGCAGGGTAAAACTAAAGATAAAGAGGTTGGAGAACACCAATGGCCGCCAAGCAACATATGCTAAAAGGAAAAATGGAATTATGAAAAAAGCTGCTGAATTATCTATATTGTGTGACATAGATATCATACTTCTCATGTTTGCGCCAAATGGAAAGCCTTCGGTATGTAGGGGGAGACGCAGTAACTTAGAGGAAGTTATTGCGAAGTTTGCTCAACTAACTCCTCAGGAAAGGGCAAAAAGGAAGTTGGAGACTCTTGAGGCACTGAAGAAAACGTTTAAGAAGTTAGACCATGATGTAAATATACAAGAATTTCTGGGCACAAGTAGTCAAAATATTGAGGATTTGAGTAATCAAGCCAGGTTATTGCAGTCCCAAATTTCTGAGACTCACAAGAGATTAAGTTGTTGGACTGAGTTTGATAAAATAACCAATGTGGAACAACTAGGACAGATGGAAAATTCACTCAGGGAGTCCCTAAATCAAATTCGAACCCGAAAGGAAAACATAAAAAAGCATCAACTTGTCTCGCTGCAATGCAATAATCAGTTCAATGAAATGAATATTCCCTTTAGAATGAGTGCAGAGCAGCATCTCCAACCTCTTTCATGGATTACGAATGGTGACAGCCAGAATATAGTTTTACCTGAGGACTCAACCATGTTTCTCCACAAAGATGTAGAGGGATCTGCAAGTTCATCTTTTGGGAGTTATGCGAGTTATCTAGGTTCAAGTATGAAGAATGAGATGTCTAACTCGGCACAAGAAAATGGGGTTCTTAGTGAGCTGAGCAGCACTGCAAATATGAGACTACAATTGAATGGACAGTTTCCATACCTTCCATACAATTTTAATTTACTGAATAATTTGAAGTTTCAACCAAATGCAGAGATGAATCCACATGAAAATCCTGTAGATTATCATGTGAATGGAAGTTTAGAAGCACCGAGATCTGGTTTTGATTCTAATCACCATGCTTGGGCTTCCACATCAGGGCCCTGTGGTGTTACAATGTTTGATGACCAGTTGTATGCCCAGGCAAGCTCCACTAAAATGCACTTTGGCTTCACATAG 1140 0.3904 MRTIKVIVVVNYVYMYIIMCRMGRVKLKIKRLENTNGRQATYAKRKNGIMKKAAELSILCDIDIILLMFAPNGKPSVCRGRRSNLEEVIAKFAQLTPQERAKRKLETLEALKKTFKKLDHDVNIQEFLGTSSQNIEDLSNQARLLQSQISETHKRLSCWTEFDKITNVEQLGQMENSLRESLNQIRTRKENIKKHQLVSLQCNNQFNEMNIPFRMSAEQHLQPLSWITNGDSQNIVLPEDSTMFLHKDVEGSASSSFGSYASYLGSSMKNEMSNSAQENGVLSELSSTANMRLQLNGQFPYLPYNFNLLNNLKFQPNAEMNPHENPVDYHVNGSLEAPRSGFDSNHHAWASTSGPCGVTMFDDQLYAQASSTKMHFGFT 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6603g00001 379 PRINTS MADS domain signature 59 80 IPR002100 GO:0003677|GO:0046983
Vium6603g00001 379 PRINTS MADS domain signature 44 59 IPR002100 GO:0003677|GO:0046983
Vium6603g00001 379 PRINTS MADS domain signature 24 44 IPR002100 GO:0003677|GO:0046983
Vium6603g00001 379 ProSiteProfiles MADS-box domain profile. 22 74 IPR002100 GO:0003677|GO:0046983
Vium6603g00001 379 Coils Coil 135 155 - -
Vium6603g00001 379 FunFam Agamous-like MADS-box protein AGL30 35 117 - -
Vium6603g00001 379 Gene3D - 35 118 IPR036879 GO:0003677|GO:0046983
Vium6603g00001 379 PANTHER SERUM RESPONSE FACTOR HOMOLOG 22 259 - -
Vium6603g00001 379 SMART madsneu2 22 81 IPR002100 GO:0003677|GO:0046983
Vium6603g00001 379 Coils Coil 98 118 - -
Vium6603g00001 379 CDD MADS 23 77 - -
Vium6603g00001 379 SUPERFAMILY SRF-like 23 116 IPR036879 GO:0003677|GO:0046983
Vium6603g00001 379 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 31 75 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6603g00001 Vium-Chr6603 4549 12597 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6603g00001 22 368 Type I MADS-box Gene Family AT2G03060 48.942 2.27e-105 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vium6603g00001 SRF-TF 1.2e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6603g00001 - - gmx:100811701 598.971