LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium6601g00006	ATGGAATTCGAGACCCCATATCCAACTTGTTTTGTGTCAAATTCAAATTGGTTTGTTCAAGAGGGTCACTACACAGAATGGAGTAGAGAAGAGAATAAGCAGTTTGAAAGTGCCCTTGCCATATATGACAAGGATACCCCTGACAGATGGCTGAGGGTTGCGGCCATGCTCCCGGGAAGAAGTGTCTATGATGTGATAAAACAGTACAGGGAATTGGAAGAAGATGTCAGTGAAATAGAAGCAGGAAGGATTCCAATTCCTGGATATCTTACCTCTTCTTTCTCATTGGAGATGGTTGACAACCAATGTTATGATGCCTGCGGAAAGAAGTCTGCAACAGTCAGGAGTTCTGATCAGGAGAAGAAGAAAGGGGTCCCTTGGACAGAAGAGGAACACAGACGTTTTTTGATGGGACTTTTAAAGTATGGTAAAGGGGACTGGAGAAATATTTCTCGCAAATTTGTGATCACAAAGACTCCCACTCAAGTGGCAAGCCATGCTCAAAAGTATTACATAAGGCAAAAGCTTTCTGGAGGGAAATACAATAAGAGGAGGCCTAGTATCCATGACATCACCATTGTTAATCTTACATCACACCAAGAGAAGTTCAATGAATCTCACATGCCCTCTGAGAAACCGAAGCTGAATGGCATGCCAAAAGTGCAGCTTGAATGGATAAATCGCCACAACAATATTGGTTCACTTGTGGCTTTCAATCCAAATTATGATATGTTGATGTCACCTTCATCTGGCATCGTATCTCCCAAGACCCTCAAATTGCAAGGTCTGGATTTCTATGAATGTGCTTTTCATGAGACTTATGCCAAGCTTAAAAATCCGGGTTTCAACAAGGAAGCTATTTTTGGTATTCATGCACTGTCGTGCCCGCTCTGA	894	0.4239	MEFETPYPTCFVSNSNWFVQEGHYTEWSREENKQFESALAIYDKDTPDRWLRVAAMLPGRSVYDVIKQYRELEEDVSEIEAGRIPIPGYLTSSFSLEMVDNQCYDACGKKSATVRSSDQEKKKGVPWTEEEHRRFLMGLLKYGKGDWRNISRKFVITKTPTQVASHAQKYYIRQKLSGGKYNKRRPSIHDITIVNLTSHQEKFNESHMPSEKPKLNGMPKVQLEWINRHNNIGSLVAFNPNYDMLMSPSSGIVSPKTLKLQGLDFYECAFHETYAKLKNPGFNKEAIFGIHALSCPL	297

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium6601g00006	297	ProSiteProfiles	Myb-like domain profile.	27	73	IPR001005	-
	Vium6601g00006	297	CDD	SANT	26	72	IPR001005	-
	Vium6601g00006	297	ProSiteProfiles	Myb-like domain profile.	119	171	IPR001005	-
	Vium6601g00006	297	PANTHER	DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED	22	222	IPR043363	-
	Vium6601g00006	297	Gene3D	-	20	86	-	-
	Vium6601g00006	297	SMART	sant	23	75	IPR001005	-
	Vium6601g00006	297	SMART	sant	123	173	IPR001005	-
	Vium6601g00006	297	SUPERFAMILY	Homeodomain-like	121	175	IPR009057	-
	Vium6601g00006	297	Pfam	Myb-like DNA-binding domain	26	71	IPR001005	-
	Vium6601g00006	297	Pfam	Myb-like DNA-binding domain	126	170	IPR001005	-
	Vium6601g00006	297	SUPERFAMILY	Homeodomain-like	26	79	IPR009057	-
	Vium6601g00006	297	NCBIfam	myb-like DNA-binding domain, SHAQKYF class	122	174	IPR006447	GO:0003677
	Vium6601g00006	297	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	119	175	IPR017930	-
	Vium6601g00006	297	FunFam	transcription factor MYB1R1	125	176	-	-
	Vium6601g00006	297	ProSiteProfiles	SANT domain profile.	127	175	IPR017884	-
	Vium6601g00006	297	CDD	SANT	126	170	IPR001005	-
	Vium6601g00006	297	Gene3D	-	125	176	-	-
	Vium6601g00006	297	FunFam	Transcription factor SRM1	19	86	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium6601g00006	Vium-Chr6601	61127	63143	Tandem

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Vium6601g00006		Myb_DNA-binding	7.4e-11	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium6601g00006	-		-	gmx:100783469	490.73