Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6601g00003 ATGTCGGACGCTTTGATCAATGGATTGGCCGGAGCTGGAGGCGGGATCATTGCTCAGCTCATCACGTACCCACTTTCAACTGTAAACACTCGTCAACAAACCGAGCGTGATCCGAAGAGAGAGACAAGCAGCCAAGGTGCCCTCGAACGAATGTGCCAGGTTGTAAAAGAAGAAGGGTGGGAACGGTTGTATGGAGGCTTGATGCCGTCTCTAGTGGGTACCGCTGCGTCTCAGGGTGTTTACTATTATTTCTATCAAATATTCAGGAACATGGCTGAAGCAGCTGCGCTACAGAAAAAGAAAATGGGTGTCAGTGATGGATCAGTTGGGATGCTCTCCTCTCTTCTCACTGCTGCTTTATCCGGGTGTGTTAACGTGCTCTTGACAAATCCCATATGGGTAGTTGTTACTCGTATGCAGGCACATAGAAAAGAGTCGAACCATGCACCGGATCAAGGTTTGTTAGTTTCCACTGAGCAAGAAACTATTTCTGCAGTTGAGCTTCTTCCTTACGGAACTAGCCGTGTGATTCAAGAAATCTTTGATGAAGCTGGTATTCGGGGTTTCTGGAAAGGTGTATTACCATCACTGATCATGGTAAGCAATCCTTCCATACAGTTCATGCTGTATGAAGCCATGTTGTCAAAGTTAAGAAAAAGACGTAACAGCAACAGGGTAACTGCTTTAGAGATATTTTTTCTTGGGGCTTTGGCTAAGCTTGGAGCTACTGTTGTAACTTATCCACTCCTTGTTGTAAAGGCGAGGCTCCAGGCTAGGCAGGATAAAACAGGAGACAGGAGGCACCATTACAAAGGTACCAGGGATGCTATTATTAAAATGATCCGCTATGAAGGGTTGAATGGGTTTTACAAAGGTATGGGCACAAAAATTGTACAGAGTGTGCTTGCTGCTGCTGTTATATTCACCATGAAAGAAGAACTGGTTAGGGGGGTTCACTTCTTGCTTGCCAAGCAAGCTGCCAAAACTGTAAAGCTAAAGCCTGTCTGA 1008 0.4554 MSDALINGLAGAGGGIIAQLITYPLSTVNTRQQTERDPKRETSSQGALERMCQVVKEEGWERLYGGLMPSLVGTAASQGVYYYFYQIFRNMAEAAALQKKKMGVSDGSVGMLSSLLTAALSGCVNVLLTNPIWVVVTRMQAHRKESNHAPDQGLLVSTEQETISAVELLPYGTSRVIQEIFDEAGIRGFWKGVLPSLIMVSNPSIQFMLYEAMLSKLRKRRNSNRVTALEIFFLGALAKLGATVVTYPLLVVKARLQARQDKTGDRRHHYKGTRDAIIKMIRYEGLNGFYKGMGTKIVQSVLAAAVIFTMKEELVRGVHFLLAKQAAKTVKLKPV 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6601g00003 335 ProSiteProfiles Solute carrier (Solcar) repeat profile. 109 216 IPR018108 -
Vium6601g00003 335 MobiDBLite consensus disorder prediction 29 48 - -
Vium6601g00003 335 ProSiteProfiles Solute carrier (Solcar) repeat profile. 226 317 IPR018108 -
Vium6601g00003 335 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 1 319 IPR044712 GO:0006862|GO:0055085
Vium6601g00003 335 Gene3D Mitochondrial carrier domain 6 325 IPR023395 -
Vium6601g00003 335 Pfam Mitochondrial carrier protein 7 91 IPR018108 -
Vium6601g00003 335 Pfam Mitochondrial carrier protein 109 219 IPR018108 -
Vium6601g00003 335 Pfam Mitochondrial carrier protein 227 316 IPR018108 -
Vium6601g00003 335 ProSiteProfiles Solute carrier (Solcar) repeat profile. 2 91 IPR018108 -
Vium6601g00003 335 SUPERFAMILY Mitochondrial carrier 3 313 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6601g00003 Vium-Chr6601 28204 33509 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6601g00003 24 316 Chloroplast and Mitochondria Gene Families AT1G25380 28.428 3.38e-32 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6601g00003 K13354 - gmx:100775784 545.043