Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6598g00003 ATGACAATCGGATGGGGTTCGATCTTCTCTAGTTGTTTCAGGAGTGAGTCTGTCTCTCCTTCTCCCAAGCCCACCACCAAAGAGGTGGCTAAAAAGGGTGGCTCTTCTTCCAACAGGGTCTCCATCATGGACTTGAGTTTTCCTGGCTCAACGCTTTCGGAGGATCTCTCCGTTTCTTTAGTGGGGTCTAACCTCCATGTTTTTTCACTCGCCGAGCTCAAGATCATCACACAGAGTTTCTCTTCGAGTAACTTTTTAGGAGAAGGAGGTTTTGGACCCGTGCACAAGGGCTTCATTGATGACAAGCTTAGGCCTGGCCTCGAGGCTCAACCGGTGGCCGTCAAGCTCTTGGACTTGGACGGTTCTCAGGGCCACAAGGAGTGGTTGACGGAAGTTGTGTTTCTGGGTCAACTAAGGCATCAACATCTGGTGAAGTTGATTGGATATTGCTGTGAAGAAGAACATAGGCTTCTGGTATATGAATATCTACCACGAGGCAGCTTAGAGAATCAACTGTTTAGAAGATTTACGGCATCGTTACCATGGTCAACAAGAATGAAAATTGCAGCGGGAGCTGCAAAGGGTCTAGCCTTTCTACATGAAGCAAAAAAACCAGTTATCTATAGAGATTTCAAAGCTTCAAACATTTTGTTAGACTCTGATTATAATGCAAAGCTTTCTGACTTTGGCTTGGCAAAAGATGGTCCCGAAGGAGATGACACGCACGTTTCAACCAGAGTCATGGGCACACAAGGGTATGCGGCCCCGGAATACATCATGACAGGACACTTGACAGCAATGAGTGATGTATACAGTTTTGGAGTTGTTCTCTTGGAGATTCTAACAGGAAGAAGATCAGTGGACAAAGGGCGCCCCCCAAGAGAACAAAATCTCGTGGAGTGGGCCAGACCTGTTCTGAATGATTCCCGGAAACTCGGCCGAATAATGGATCCAAGACTTGAGGGACAGTATTCTGAGGCAGGGGCAAGAAAAGCAGCTGCATTGGCTTACCAATGTCTCAGCCACAGGCCAAGAAGTAGACCCTTGATGAGCACTGTGGTTAGTGTTCTTGAGCCTCTTAAGGACTTCGAGGATGTTCCAATTGGACCCTTTGTTTACACTGTTCCACCTGATCATAATGAAATGGCAAAAGAGGTTGAAACACCCAAGGATAGGAAGAGGGAGAATGGTCATCATCATCATCATCACAAGAATGGTCATAGACATCATGATCACGACGAGGCTAATAAAGATGCAAATGGTCACCATCACCACCGAAATCGTCGCCACAATAGGCCTCATCCACTTAAATCACCCAAGACACCAATTTCATCATCAGAGTCACAGAGTAATGAACACCGAAATGCCAGAAGAAGTGGGTCAAATTCACCTGACACCTCTATTGCATCAGAAGCACAAGGAAGCATGGGCTAG 1434 0.4651 MTIGWGSIFSSCFRSESVSPSPKPTTKEVAKKGGSSSNRVSIMDLSFPGSTLSEDLSVSLVGSNLHVFSLAELKIITQSFSSSNFLGEGGFGPVHKGFIDDKLRPGLEAQPVAVKLLDLDGSQGHKEWLTEVVFLGQLRHQHLVKLIGYCCEEEHRLLVYEYLPRGSLENQLFRRFTASLPWSTRMKIAAGAAKGLAFLHEAKKPVIYRDFKASNILLDSDYNAKLSDFGLAKDGPEGDDTHVSTRVMGTQGYAAPEYIMTGHLTAMSDVYSFGVVLLEILTGRRSVDKGRPPREQNLVEWARPVLNDSRKLGRIMDPRLEGQYSEAGARKAAALAYQCLSHRPRSRPLMSTVVSVLEPLKDFEDVPIGPFVYTVPPDHNEMAKEVETPKDRKRENGHHHHHHKNGHRHHDHDEANKDANGHHHHRNRRHNRPHPLKSPKTPISSSESQSNEHRNARRSGSNSPDTSIASEAQGSMG 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6598g00003 477 MobiDBLite consensus disorder prediction 373 477 - -
Vium6598g00003 477 MobiDBLite consensus disorder prediction 380 394 - -
Vium6598g00003 477 Gene3D Transferase(Phosphotransferase) domain 1 163 366 - -
Vium6598g00003 477 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Vium6598g00003 477 SUPERFAMILY Protein kinase-like (PK-like) 55 358 IPR011009 -
Vium6598g00003 477 Gene3D Phosphorylase Kinase; domain 1 49 162 - -
Vium6598g00003 477 MobiDBLite consensus disorder prediction 438 477 - -
Vium6598g00003 477 MobiDBLite consensus disorder prediction 14 37 - -
Vium6598g00003 477 MobiDBLite consensus disorder prediction 422 436 - -
Vium6598g00003 477 FunFam Probable serine/threonine-protein kinase PBL8 163 371 - -
Vium6598g00003 477 Pfam Protein tyrosine and serine/threonine kinase 84 356 IPR001245 GO:0004672|GO:0006468
Vium6598g00003 477 FunFam Serine/threonine-protein kinase BIK1 49 162 - -
Vium6598g00003 477 ProSiteProfiles Protein kinase domain profile. 80 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6598g00003 477 PANTHER OS01G0588500 PROTEIN-RELATED 38 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6598g00003 Vium-Chr6598 42885 45337 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6598g00003 66 377 Glycoside Hydrolase AT3G07070 52.698 2.49e-103 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vium6598g00003 PK_Tyr_Ser-Thr 4.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6598g00003 - - gmx:100799411 796.578