Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6598g00002 ATGTTCCTTATAAATGAAAGCTCAGAAGAGGCATTGCATTCTAATGGTGTGATTAAGCAAAAGGAACAGCAAGTCATGGAATTATTTTCAGTTTTGCTTTCTTCCATCTTCTATCTGTCTCTTCTCCTCGGCCTCCAACTCACGCCGGTGTCTGCCAGGAAGAGTTACATAGTACACATGAAAGAGCGCCACGATCCTAGCGTGCACCCCACGCACCTTGACTGGTACACTGCCACGCTCTCTTCTTCTCCAGACTCTCTCCTTTATGCCTACACCTCTGTTTACAACGGCTTTGCTGCCACACTCGACCCTCAACAACTCCACGCGCTCAGAACTTCCGACTCAGTTTTGGGTGTATACGAAGACACGCTTTACAAGCTACACACCACACGCACCCCTGAGTTCCTGGGCCTCCAGGCCCATTCTGAGTTTTGGGAAGACCTTCACCACGCATCACACAACGTCGTTATTGGGGTCCTTGACACTGGCGTCTGGCCAGAATCCCAAAGCTTTGATGATTCCCAAATGCCTCAAACCCCCACGCGCTGGCGGGGAACCTGCGACTCCGCACCTGATTTCGACCCTTCTCTTTGTAACAACAAACTTATCGGAGCTCGCAGTTTCTCCAAGGGCTACCTCATGGCTTCTGGTAACTCCAGAAAACCCAGAGACATTGCTTCGCCGCGTGACCGTGACGGCCACGGCACGCACACAGCCTCTACAGCAGCAGGCTCCGTCGTCTCCAACGCCACGCTTCTAGGTTACGCCACCGGCACCGCACGCGGGATGGCGCCGCAGGCGCGCGTGGCGGCTTACAAAGTCTGCTGGACTGATGGCTGTTTCGCCTCCGACATTCTTGCCGGAATGGATCAGGCAATCCAGGACGGAGTCGATGTCCTCTCGCTCTCCCTCGGCGGCTCCTCCTCCGTTCCTTACTACTTCGACACCATTGCTATTGGAGCCTTCGCGGCAGTGGAGAGAGGAATATTCGTTTCGTGTTCCGCAGGGAATACTGGACCTCGAAGCGGTTCTGTTGCTAATGTCGCTCCGTGGATCATGACCGTCGGAGCCGGAACACTGGACCGTGATTTTCCGGCATACGCTACTCTTGGGAACGGGAAACGCTTTGCCGGCGTTTCGCTCTACAGTGGTGAAGGTATGGGAGATGAACCGGTTGGATTGGTTTATTTCAGCGACCCGTCGAACTCTTCGAGCAGCATTTGCATGCCTGGCTCACTGGACCCGGAGACAGTGCGCGGGAAGGTGGTGGTTTGTGACAGAGGGCTTAACGCGCGCGTAGAGAAGGGCACAGTTGTGCGCGACGCGGGCGGGGTGGGGATGATACTGGCGAACACAGCGATGAGCGGCGAGGGACTGGTGGCGGACAGTCATCTTGTGGCCGCCGTGGCAGTGGGGGAAAACGCGGGTGATGAGATTAGAGAGTATGCGTCGTTGGATCCTAATCCAACCGCTGTTCTGAGCTTCGGTGGGACCGTGTTGAACGTCAGGCCGTCGCCTGTGGTGGCAGCGTTTAGCTCTCGCGGGCCCAATGGTGTGACGGCCCAGATACTAAATCCGGATATTATTGGGCCTGGAGTGAACATCTTAGCAGGTTGGTCTGGTGCAGTTGGGCCATCTGGGTCTGAAGACACTCGCAAAACGCGGTTCAATATCATGTCCGGTACTTCCATGTCTTGTCCTCACATAAGTGGGTTGGCTGCGCTGTTGAAAGCAGCGCATCCAGATTGGAGTCCAAGTGCGATCAAATCTGCTCTCATGACAACGGCTTATACCCACGACAACACAGAGTCTCCGCTTCGTGATGCAACGGGAGAAGAAGCCCTCTCCACACCATGGGCCTATGGGGCCGGTCACGTGAACCCACAAAAGGCCCTATCTCCTGGCCTTGTTTATTATGCCTCCACACAGGACTACATTGCCTTTTTGTGCTCCCTCAACTACACCCTCGACCATCTCAGACTCGTGGTTAAGAATCCCAACGTCATTTGTTCCACAAAATTTGCTGACCCGGGTGACCTCAATTATCCATCTTTCTCGGTCGTTTTCGGAACCAATAGGGTTGTACGGTACACGCGCACGTTGACCAACGTGGGGGAGGCGGCATCTGTGTATGACGTGGAGGTTAGCGCGCCATCCTCTGTGGAGATAACGGTGAATCCTAACAGGGTTTCGTTTACAGAAGTGGGGGATCGACAAACGTACACGGTGACCTTTGTGTCGAATAGGAGTGTTAATGACTCGGCTGCTTCTGAATTTGGTAGCATCATGTGGATCAATGAAGAACACAAAGTTAGGAGCCCGGTTGCTTTCACATGGACATATTTTTGA 2349 0.5402 MFLINESSEEALHSNGVIKQKEQQVMELFSVLLSSIFYLSLLLGLQLTPVSARKSYIVHMKERHDPSVHPTHLDWYTATLSSSPDSLLYAYTSVYNGFAATLDPQQLHALRTSDSVLGVYEDTLYKLHTTRTPEFLGLQAHSEFWEDLHHASHNVVIGVLDTGVWPESQSFDDSQMPQTPTRWRGTCDSAPDFDPSLCNNKLIGARSFSKGYLMASGNSRKPRDIASPRDRDGHGTHTASTAAGSVVSNATLLGYATGTARGMAPQARVAAYKVCWTDGCFASDILAGMDQAIQDGVDVLSLSLGGSSSVPYYFDTIAIGAFAAVERGIFVSCSAGNTGPRSGSVANVAPWIMTVGAGTLDRDFPAYATLGNGKRFAGVSLYSGEGMGDEPVGLVYFSDPSNSSSSICMPGSLDPETVRGKVVVCDRGLNARVEKGTVVRDAGGVGMILANTAMSGEGLVADSHLVAAVAVGENAGDEIREYASLDPNPTAVLSFGGTVLNVRPSPVVAAFSSRGPNGVTAQILNPDIIGPGVNILAGWSGAVGPSGSEDTRKTRFNIMSGTSMSCPHISGLAALLKAAHPDWSPSAIKSALMTTAYTHDNTESPLRDATGEEALSTPWAYGAGHVNPQKALSPGLVYYASTQDYIAFLCSLNYTLDHLRLVVKNPNVICSTKFADPGDLNYPSFSVVFGTNRVVRYTRTLTNVGEAASVYDVEVSAPSSVEITVNPNRVSFTEVGDRQTYTVTFVSNRSVNDSAASEFGSIMWINEEHKVRSPVAFTWTYF 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6598g00002 782 CDD PA_subtilisin_like 367 491 - -
Vium6598g00002 782 Gene3D - 649 779 - -
Vium6598g00002 782 MobiDBLite consensus disorder prediction 214 240 - -
Vium6598g00002 782 FunFam Subtilisin-like protease SBT1.5 649 780 - -
Vium6598g00002 782 ProSitePatterns Serine proteases, subtilase family, serine active site. 561 571 IPR023828 -
Vium6598g00002 782 SUPERFAMILY Subtilisin-like 127 636 IPR036852 GO:0004252|GO:0006508
Vium6598g00002 782 ProSiteProfiles Serine proteases, subtilase domain profile. 135 632 - -
Vium6598g00002 782 FunFam Subtilisin-like protease SBT1.9 47 128 - -
Vium6598g00002 782 CDD Peptidases_S8_3 125 597 IPR034197 -
Vium6598g00002 782 Pfam PA domain 408 479 IPR003137 -
Vium6598g00002 782 Pfam Peptidase inhibitor I9 55 128 IPR010259 -
Vium6598g00002 782 Gene3D Peptidase S8/S53 domain 154 645 IPR036852 GO:0004252|GO:0006508
Vium6598g00002 782 FunFam subtilisin-like protease SBT1.5 361 500 - -
Vium6598g00002 782 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 56 776 IPR045051 -
Vium6598g00002 782 Gene3D - 361 500 - -
Vium6598g00002 782 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 47 128 IPR037045 -
Vium6598g00002 782 SUPERFAMILY Protease propeptides/inhibitors 53 126 - -
Vium6598g00002 782 Pfam Subtilase family 153 601 IPR000209 GO:0006508|GO:0008236
Vium6598g00002 782 Pfam Fibronectin type-III domain 679 776 IPR041469 -
Vium6598g00002 782 PRINTS Subtilisin serine protease family (S8) signature 230 243 IPR015500 -
Vium6598g00002 782 PRINTS Subtilisin serine protease family (S8) signature 152 171 IPR015500 -
Vium6598g00002 782 PRINTS Subtilisin serine protease family (S8) signature 560 576 IPR015500 -
Vium6598g00002 782 FunFam Subtilisin-like protease SBT1.5 154 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6598g00002 Vium-Chr6598 13129 15789 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6598g00002 47 782 Subtilisin-like Serine Gene Family AT2G05920 65.811 0.0 979
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6598g00002 - - gmx:100786523 1315.83