Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6596g00020 ATGGGTAAAGAGAAGGTTCATATCAACATTGTGGTGATTGGCCATGTGGACTCTGGAAAGTCCACTACCACGGGTCACCTCATCTACAAGCTTGGAGGTATTGACAAACGTGTGATAGAGAGATTCGAGAAAGAAGCTGCTGAGATGAACAAGAGGTCATTCAAGTATGCCTGGGTTCTTGACAAGCTCAAGGCTGAGCGTGAAAGAGGAATCACCATTGACATTGCTCTCTGGAAATTTGAGACCACCAAGTACTACTGCACAGTCATTGATGCCCCCGGACACAGGGATTTCATTAAGAATATGATTACTGGGACATCCCAAGCTGATTGTGCTGTTCTTATTATTGATTCCACCACTGGTGGTTTTGAAGCTGGTATTTCTAAGGATGGACAGACCCGTGAACATGCTCTCCTTGCTTTCACTCTTGGTGTGAGGCAGATGATTTGCTGCTGTAACAAGATGGATGCTACTACGCCTAAGTACTCCAAGGCAAGGTATGATGAAATTGTGAAGGAAGTTTCTTCTTACATGAAGAAGGTCGGTTACAACCCTGACAAGATCCCTTTTGTTCCCATCTCTGGTTTTGAGGGAGATAACATGATTGAGAGGTCTACCAACCTTGACTGGTACAAGGGTCCAACTCTTCTGGAGGCTCTTGATCAGATCAATGAGCCAAAGAGGCCATCAGACAAGCCTCTTAGGTTGCCCCTTCAGGATGTGTACAAGATTGGAGGAATTGGAACTGTGCCTGTCGGACGTGTTGAAACTGGTGTCTTGAAACCTGGAATGGTTGTTACCTTTGCACCCACTGGACTGACAACTGAAGTTAAGTCCGTGGAGATGCACCACGAAACACTCACTGAGGCTCTTCCCGGTGACAATGTGGGATTCAACGTGAAGAATGTTGCTGTGAAGGATTTGAAACGTGGTTTCGTTGCCTCAAACTCCAAGGATGACCCTGCGAAGGAGGCTGCAAATTTCACGTCCCAAGTTATCATCATGAATCATCCTGGGCAGATTGGAAATGGCTATGCACCTGTTCTTGACTGCCACACCTCCCACATTGCTGTGAAGTTTGCCGAACTCGTGACCAAGATTGACAGGCGGTCTGGTAAAGAGCTGGAGAAGGAGCCTAAATTCCTGAAGAACGGAGATGCTGGTTTTGTGAAGATGATTCCCACAAAGCCCATGGTGGTTGAAACCTTCTCTGAATATCCTCCACTTGGTCGTTTTGCTGTGAGAGACATGCGTCAGACCGTGGCTGTTGGTGTCATCAAGAGCGTGGAGAAGAAGGACCCTACAGGAGCTAAGGTCACCAAGGCTGCACAGAAGAAGGGCAAATGA 1347 0.4714 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVRQMICCCNKMDATTPKYSKARYDEIVKEVSSYMKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPTGLTTEVKSVEMHHETLTEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKAAQKKGK 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6596g00020 448 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 326 429 IPR009001 -
Vium6596g00020 448 Gene3D - 1 226 IPR027417 -
Vium6596g00020 448 NCBIfam translation elongation factor EF-1 subunit alpha 1 433 IPR004539 GO:0003746|GO:0005525|GO:0006414
Vium6596g00020 448 FunFam Elongation factor 1-alpha 1 226 - -
Vium6596g00020 448 Gene3D Translation factors 323 430 - -
Vium6596g00020 448 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 249 IPR027417 -
Vium6596g00020 448 CDD EF1_alpha_II 230 320 - -
Vium6596g00020 448 Pfam Elongation factor Tu domain 2 248 313 IPR004161 GO:0005525
Vium6596g00020 448 Pfam Elongation factor Tu GTP binding domain 6 222 IPR000795 GO:0003924|GO:0005525
Vium6596g00020 448 Gene3D Translation factors 229 316 - -
Vium6596g00020 448 PRINTS GTP-binding elongation factor signature 148 157 IPR000795 GO:0003924|GO:0005525
Vium6596g00020 448 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Vium6596g00020 448 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924|GO:0005525
Vium6596g00020 448 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924|GO:0005525
Vium6596g00020 448 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924|GO:0005525
Vium6596g00020 448 FunFam Elongation factor 1-alpha 229 316 - -
Vium6596g00020 448 CDD EF1_alpha 9 227 - -
Vium6596g00020 448 Pfam Elongation factor Tu C-terminal domain 322 429 IPR004160 -
Vium6596g00020 448 SUPERFAMILY Translation proteins 231 321 IPR009000 -
Vium6596g00020 448 CDD EF1_alpha_III 323 426 - -
Vium6596g00020 448 Hamap Elongation factor Tu [tuf]. 2 432 IPR004539 GO:0003746|GO:0005525|GO:0006414
Vium6596g00020 448 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
Vium6596g00020 448 FunFam Elongation factor 1-alpha 323 430 - -
Vium6596g00020 448 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 230 IPR000795 GO:0003924|GO:0005525
Vium6596g00020 448 PANTHER TRANSLATION FACTOR 4 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6596g00020 Vium-Chr6596 164779 166653 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6596g00020 1 440 Eukaryotic Initiation Factors Gene Family AT5G60390 96.136 0.0 883
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6596g00020 K03231 - gmx:100776330 894.804