Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6596g00017 ATGGGGAGGAAAGGGTGGTTTTATTCAGTGAAGAAAGTTTTCTTTTCTGATTCCAAAAAGGAACAGAAACATTCTCAGCAACAACATCATCCTAAGCCACCAAAGTTAGGGTGTTTTGGGGCTTATCACCCAGATGATCTAGAAGGAGCACCAATTGCTGTTGTTCCCTCACTTCCACCAAGAAAAGACACCACACCAAGAAGTGTGCCAGAGAATGAACAGAACAACCAAGCCTTTTCTTTGGTTTTGGCTACTGCCGTGGCTGCAGGGGCTGCTGTAGCCGCTGCTGCAGAGGTTTCTCGTCTCTCAACCACGAGTCGCCAAAATGTAAAATTAAATGAAGACATGGCTGCTACCACGATTCAAACAGCCTACCGTGGATATTTGGCAAGAAGATCCTTGCGAGGCTTGAGAGGTTTGGCGAGGTTGAGAACATTGGTGCAAGGGCAATCTGTTCAAAGGCAAGCAGCTACTACCTTGCAATGCATGCAAACTCTTTCACGGTTGCAGTCTCAGATTCGTGCAAGGAAGGTTAGAATGTCTGAGGAGAATCAGACTCTTAACCGGCAACTGCTGCAGAAACGTGAAAAGGAATTGGACAAGTTGCAAGCTAACCAAATTGGAGAAAAATGGGACGATAGCTCGAAATCAAAGGAGCAAGTTGAGGCAAAGCTGTTGAACAGGCAAATAGCAGCTATGAGAAGACAAAAGGCCATGGCATATGCATCAACACATCAGCAAACAAGGAGGAACTCTTCAAAATCTGCCACAAATGCTACATTTATGGATCCAAACAATCCCCACTGGGGCTGGAACTGGCTAGAGCGATGGATGGCTACTAGGCCATGGGAAGATCAAAACACTACCTACCACATTGGTCATGCATCTGCCAAGAGTGCTGTAAGAAACACCATGTCAGTTGGTGAAATCACAAAATTATACTCTCTCCGTGACCAGAACAATGATGTCAAAACAACCCCAGAAAACCAAAATCCAAAATCCCCTCAAAAAAGAGCCCGAAGGGTCTCGCTAACCAATGTAACAAGGCCAAAGGGACCAAGTGGTTCATGGGGTGGTGAAGGTGATTCAAAATCCATGTTCTACAAAGTCCATGAAAACAATCGCAGGCATAGCATTGGAGTGTCACCACTGAATGATGACGAGATCCCTTCAAGCTCTTCACCTGCTTTCCCAAGTCACACAACACCATCCACCCAGGTTGCAAAGGCCAAGCCATCATCCAAAGGGAGAAGTGCATCACAAAGAAATACAACACCCGAAAAAGTAGCTTCTGCTCCTTTAAAGAAGAGACTCTCTTTCCCTTCTTCTCCAGCCGGTGCAAGAAGGTATTCTGTTTCAACCAGACCTGGAAATGTGGCTTCCAACAAGAGTGTTGCTAATGGTTCCACCCCTGAAGAGAAAATGAGAGTGAGAAGGTAG 1440 0.4576 MGRKGWFYSVKKVFFSDSKKEQKHSQQQHHPKPPKLGCFGAYHPDDLEGAPIAVVPSLPPRKDTTPRSVPENEQNNQAFSLVLATAVAAGAAVAAAAEVSRLSTTSRQNVKLNEDMAATTIQTAYRGYLARRSLRGLRGLARLRTLVQGQSVQRQAATTLQCMQTLSRLQSQIRARKVRMSEENQTLNRQLLQKREKELDKLQANQIGEKWDDSSKSKEQVEAKLLNRQIAAMRRQKAMAYASTHQQTRRNSSKSATNATFMDPNNPHWGWNWLERWMATRPWEDQNTTYHIGHASAKSAVRNTMSVGEITKLYSLRDQNNDVKTTPENQNPKSPQKRARRVSLTNVTRPKGPSGSWGGEGDSKSMFYKVHENNRRHSIGVSPLNDDEIPSSSSPAFPSHTTPSTQVAKAKPSSKGRSASQRNTTPEKVASAPLKKRLSFPSSPAGARRYSVSTRPGNVASNKSVANGSTPEEKMRVRR 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6596g00017 479 MobiDBLite consensus disorder prediction 446 469 - -
Vium6596g00017 479 MobiDBLite consensus disorder prediction 242 263 - -
Vium6596g00017 479 MobiDBLite consensus disorder prediction 318 363 - -
Vium6596g00017 479 Gene3D iswi atpase 111 138 - -
Vium6596g00017 479 MobiDBLite consensus disorder prediction 18 37 - -
Vium6596g00017 479 MobiDBLite consensus disorder prediction 54 73 - -
Vium6596g00017 479 MobiDBLite consensus disorder prediction 378 479 - -
Vium6596g00017 479 SMART iq_5 113 135 IPR000048 GO:0005515
Vium6596g00017 479 Pfam IQ calmodulin-binding motif 116 135 IPR000048 GO:0005515
Vium6596g00017 479 MobiDBLite consensus disorder prediction 318 352 - -
Vium6596g00017 479 Coils Coil 216 236 - -
Vium6596g00017 479 ProSiteProfiles IQ motif profile. 114 142 IPR000048 GO:0005515
Vium6596g00017 479 MobiDBLite consensus disorder prediction 385 428 - -
Vium6596g00017 479 Coils Coil 177 197 - -
Vium6596g00017 479 PANTHER IQ-DOMAIN 5-RELATED 1 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6596g00017 Vium-Chr6596 126473 129776 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6596g00017 1 469 IQD Protein Family AT5G03040 40.657 2.54e-91 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6596g00017 - - vun:114190307 699.893