Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6596g00014 ATGTACTACAAACTCAAAACCACCACCACAACAACACCAACAACAACAACTTCTTCACCAATCCCAATCAATCTTCCCACTATGCTCTCAAACTCTCCTCCATCTTCATCTTCTTCCCCTCCCTCACACTCTCCCACACCTTTCCCTTCACCCTCTCAGGGATCTCCAGCTCCTGCTCCGCCTTCTCCGCCGCCGCCTGTGGTCGTTAGCCCCTGTGCTGCCTGCAAGATTCTCCGCCGCAGGTGCGTCGAGAAGTGTGTCCTGGCTCCCTATTTCCCTCCCACCGATCCCCTGAAATTCACCATTGCTCACAGAGTCTTTGGAGCAAGCAACATCATCAAGTTCTTGCAGGAGTTACCAGAGTCCCAGAGAGCAGATGCTGTGAGCAGCATGGTTTATGAGGCAAATGCTAGGATCAGAGACCCAGTTTACGGGTGTGCAGGAGCAATATGCCAACTTCAGAAGCAAGTGAGCGAGCTTCAAGCACAGTTGGCAAAAGCACAAGCTGAGGTAGTGAACATACAGTGCCAACAAGCGAATTTGGTGGCTCTAATCTGCATGGAAATGAGTGAAACGCAGGAGCAGCACATGGTGCAGCCTCAACCTCACATTGACATGAGCTGCTTCATAGAGGACAACAGTTTTGGAACTGCTTGGGAGCCTCTTTGGACATGA 675 0.5111 MYYKLKTTTTTTPTTTTSSPIPINLPTMLSNSPPSSSSSPPSHSPTPFPSPSQGSPAPAPPSPPPPVVVSPCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVSELQAQLAKAQAEVVNIQCQQANLVALICMEMSETQEQHMVQPQPHIDMSCFIEDNSFGTAWEPLWT 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6596g00014 224 ProSiteProfiles LOB domain profile. 70 171 IPR004883 -
Vium6596g00014 224 MobiDBLite consensus disorder prediction 1 37 - -
Vium6596g00014 224 MobiDBLite consensus disorder prediction 1 63 - -
Vium6596g00014 224 Coils Coil 150 177 - -
Vium6596g00014 224 MobiDBLite consensus disorder prediction 38 63 - -
Vium6596g00014 224 Pfam Lateral organ boundaries (LOB) domain 71 168 IPR004883 -
Vium6596g00014 224 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 70 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6596g00014 Vium-Chr6596 91946 93494 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6596g00014 67 224 AS2 family AT1G07900 71.166 6.06e-78 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vium6596g00014 LOB 2.8e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6596g00014 - - vra:106771364 337.035