Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6595g00002 ATGGAATGCTGTAAGAAGGTGTATGAGTGGTTATGCAATGCAAAAGCATATCTCATAATATTGAGCTTGCAATTTGGGTCTGCTGGCATGTACCTTATCACCATGGATGCTCTCAACAAGGGCATGAGCCATTATGTTTTTGTTGTTTATCGCAATATCATCGCCACTGTAGTTCTTGGTCCATTCGCATTTTTTCTTGAAAGGAAAGTTAGGCCGAAGATGACAATTCGGATATTTTCAGAATTTATGGCAGTGGCTTTTGTCGAGATAATACTTGATCAATGCTTCACCTTCTTGGGAATGAAGTACACCTCAGCATCATTTGCATCTGCGGTGATGAATTCCGTACCCTCCATTACCTTTGTACTAGCAATCATTTTTAGATTGGAACGTATGAAGCTTAAGGAGGTTGGATGCTTAGCCAAAATGATTGGCACTGTGGTTTCTCTTGGAGGTGCTTTTCTAATGGCACTCTACAAAGGTCCTATTCTTAATATTGCAGGCTCATCAGCCACCAACGTTGGCCAGCCTGAGAATGTGAACGACCCATCTGGAAATCATTGGCTCACCGGTGCATGTTTTCTCCTCATAGGCTGTGCTGGCTTCTCTGCTTTCTACATATTACAAACTATGACATTGAGAAAGTACCCAGCAGAGATGTCCCTAGCAACTTGGGTTTGCTTTCTGGGTGCACTTCAGAGCGGTGTCCTTACAATTTTCATGGAGCGCAATACCCATGTCTGGTCTGTGGGCTGGGATTCTAGGCTTCTTGCTTATGGATATTCGGGAATAGTAACATCAGCAATCCAATTTTATGTGCAAGGCATGGTTATTAAAACCACAGGGCCAGTGTTTGTGACTGCATTTAATCCTTTGCGTATGATCATAGTGACAGCCTTGGCCTGCATAGTCCTGTCGGAGAAACTCCACCTTGGAAGCATTATGGGAGGAGCTGTGGTGGTAGTTGGGCTTTACCTAGTTGTGTGGGGAAAATCTAAAGAACAGAAGAAGCATTCGATGCCAGCGTCCCCTGAAAAGGAGACCCTGCAACGCCAGCAACAGCTACCACTTAGTGTACTCCGAAGTGATGACAACAATGATAACAAACCTCAAATGGTCATAATTGGAGACAAAAACCACGACATGGAAGAAGGCAGAACAGTGAATACATCACTGTCAATCTAA 1185 0.4371 MECCKKVYEWLCNAKAYLIILSLQFGSAGMYLITMDALNKGMSHYVFVVYRNIIATVVLGPFAFFLERKVRPKMTIRIFSEFMAVAFVEIILDQCFTFLGMKYTSASFASAVMNSVPSITFVLAIIFRLERMKLKEVGCLAKMIGTVVSLGGAFLMALYKGPILNIAGSSATNVGQPENVNDPSGNHWLTGACFLLIGCAGFSAFYILQTMTLRKYPAEMSLATWVCFLGALQSGVLTIFMERNTHVWSVGWDSRLLAYGYSGIVTSAIQFYVQGMVIKTTGPVFVTAFNPLRMIIVTALACIVLSEKLHLGSIMGGAVVVVGLYLVVWGKSKEQKKHSMPASPEKETLQRQQQLPLSVLRSDDNNDNKPQMVIIGDKNHDMEEGRTVNTSLSI 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6595g00002 394 MobiDBLite consensus disorder prediction 358 394 - -
Vium6595g00002 394 SUPERFAMILY Multidrug resistance efflux transporter EmrE 50 160 - -
Vium6595g00002 394 Pfam EamA-like transporter family 27 157 IPR000620 GO:0016020
Vium6595g00002 394 Pfam EamA-like transporter family 190 328 IPR000620 GO:0016020
Vium6595g00002 394 PANTHER WAT1-RELATED PROTEIN 18 340 IPR030184 GO:0016020|GO:0022857
Vium6595g00002 394 SUPERFAMILY Multidrug resistance efflux transporter EmrE 226 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6595g00002 Vium-Chr6595 44214 48346 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6595g00002 15 367 Nodulin-like Gene Family AT1G44800 44.225 1.87e-110 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6595g00002 - - gmx:100813852 653.669