Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6590g00001 ATGCAGCGTAGCATCGAGATGGGCGAAGGGGAAGCAAAAGCGATGGTCCCAGAATCGGTGGTGAAGAAGGAGAAAAGGAACGAGGAGTGGGCTTTGGCTAAAAAACAGCAAGTGGAAGCAACGAAGAAAAAGAGATCCGAAACTCGGAAATTGATTTTTAGCAGAGCCAAACAGTATGCAAAGGAATACGAGGAGCAGCAAAAGGAACTAATTAGGTTGAAGCGTGAAGCCAAGCTTAAGGGAGGGTTTTATGTTGACCCTGAAACTAAGCTTTTGTTCATCATCAGGATTCGTGGTATCAATGCCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTTGAGACAGATTTTTAATGGCGTCTTTCTTAAAGTGAACAAAGCAACCTTGAATATGCTGCATAGGGTAGAGCCGTATGTTACCTACGGGTACCCTAATTTGAAGAGTGTAAAAGAATTGATCTACAAGAGGGGCTTTGGAAAAGTGAACAAGCAGAGAATTCCTCTGACTGACAATTCTATAATAGAACAGACTTTGGGGAAGCATGGGATAATTTGCATAGAAGATCTGATCCACGAGATCATGACTGTTGGACCTCACTTCAAGGAGGCAAACAATTTTCTATGGCCTTTCAAGCTCAAAGCTCCCCTGGGTGGTTTGAAGAAGAAAAGAAATCATTATGTTGAAGGAGGTGACGCTGGCAACAGGGAAAATTATATAAATGAGCTCATTAGAAGGATGAATTAG 753 0.425 MQRSIEMGEGEAKAMVPESVVKKEKRNEEWALAKKQQVEATKKKRSETRKLIFSRAKQYAKEYEEQQKELIRLKREAKLKGGFYVDPETKLLFIIRIRGINAMDPKTRKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGFGKVNKQRIPLTDNSIIEQTLGKHGIICIEDLIHEIMTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRMN 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6590g00001 250 Gene3D - 91 196 IPR036919 -
Vium6590g00001 250 Gene3D - 197 250 IPR036919 -
Vium6590g00001 250 PANTHER 60S RIBOSOMAL PROTEIN L7 14 250 IPR039699 -
Vium6590g00001 250 Pfam Ribosomal L30 N-terminal domain 16 87 IPR012988 -
Vium6590g00001 250 NCBIfam 60S ribosomal protein uL30 17 250 IPR005998 GO:0000463|GO:0003735|GO:0022625
Vium6590g00001 250 FunFam 60S ribosomal protein L7 196 250 - -
Vium6590g00001 250 Pfam Ribosomal protein L30p/L7e 92 142 IPR016082 -
Vium6590g00001 250 SUPERFAMILY Ribosomal protein L30p/L7e 91 250 IPR036919 -
Vium6590g00001 250 CDD Ribosomal_L7_archeal_euk 91 250 IPR035808 -
Vium6590g00001 250 FunFam 60S ribosomal protein L7 91 195 - -
Vium6590g00001 250 ProSitePatterns Ribosomal protein L30 signature. 110 142 IPR018038 -
Vium6590g00001 250 Coils Coil 56 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6590g00001 Vium-Chr6590 3378 5823 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6590g00001 7 250 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 84.016 1.03e-156 433
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6590g00001 K02937 - gmx:100500011 426.402