Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6589g00014 ATGGGAGATTATAAGAGATTTTCATTTTCCAAAATGATTGGCTGCTGTGGTTGCTTCGGATTTGTGAAAAAACCTAGACGGCGTCGGGCTAAGCGTAGCATCAACAATTTCCTCTCCCATGGCCTATTATATGATGGAGAAACTGAAGGTGATGAGTCGTTTAGTGGTGATGTTACTAGTAACGCCACCAGTGGAGATGATAATGAGGCGCATGCTGTACGGAATCGTTCCGAGGATATTTTGAACTTTAGAGCTGAGAATGGCATGGTTTGTAGGCCACATCCTGTCAAGGAGACTTTTGAACTTGTTCGCTCAGAGGATGAACATGGGAACAAGATGATAAATGAATACATCCGAGAGTACAAAATTGGTTCTGGAAGCTATGCCAAAGTGGCTCTTTATCGAAGTTGCTTTGACGGAAATCACTATGCAATTAAGTCCTTTCACAAGTCTCATTTACAAAAGCTTCGCGTTGCACCCTTTGAGACGGCCATGACTGATGTTCTAAGGGAGGTACTGATTATGAAAATGGTGGAACATCCTAATATAGTCAATCTCATTGAAGTTATTGATGACCCAGAGTCGGATGACTTCTACATGGTACTTGAATATGTGGAAGGCAAATGGGTCTGTGAGGGTACAGGTCGTCCTTGTGCATTAGGTGAAGAGACCGCTAGGAAATACTTGCGTGATATAGTCTCAGGATTAACATATCTCCATGCTCACAATATAGTGCATGGGGATATAAAACCTGATAATCTGTTGATTACTCGTCATGGCAAAGTAAAGATAGTGGATTTCAGTGTCAGCCAGGCTTTTGAGGATGGCAATGATGAACTTCGTCGATCACCTGGCACCCCTGTTTTCACTGCACCAGAATGTTGTTTAGGTCTTACTTATCATGGTAAAGCTTCTGACACGTGGGCCGTAGGAGTTACTTTGTACTGTATGATATTGGGTGAATACCCATTTCTTGGAGATACACTTCAAGATACATATGACAAAATAGTCAATGATCCTTTAGTTCTGCCAGATGACATTAATCCCCAGTTAAAGAACTTAATAGAAGGATTACTGTGCAAAGACCCAGAAAAAAGGATGACATTGGGCGATGTTGCCGAGCATGTCTGGGTTATTGGAAATGATGGGCCGCTTCCTGGGTACTTATGTTGGTGCAAACGCAAGAGCCTGTTGGCTGCTGATTGTGATGAGAGCAATATACCCTTGCTTGATCCACATTGA 1242 0.4251 MGDYKRFSFSKMIGCCGCFGFVKKPRRRRAKRSINNFLSHGLLYDGETEGDESFSGDVTSNATSGDDNEAHAVRNRSEDILNFRAENGMVCRPHPVKETFELVRSEDEHGNKMINEYIREYKIGSGSYAKVALYRSCFDGNHYAIKSFHKSHLQKLRVAPFETAMTDVLREVLIMKMVEHPNIVNLIEVIDDPESDDFYMVLEYVEGKWVCEGTGRPCALGEETARKYLRDIVSGLTYLHAHNIVHGDIKPDNLLITRHGKVKIVDFSVSQAFEDGNDELRRSPGTPVFTAPECCLGLTYHGKASDTWAVGVTLYCMILGEYPFLGDTLQDTYDKIVNDPLVLPDDINPQLKNLIEGLLCKDPEKRMTLGDVAEHVWVIGNDGPLPGYLCWCKRKSLLAADCDESNIPLLDPH 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6589g00014 413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 244 256 IPR008271 GO:0004672|GO:0006468
Vium6589g00014 413 Pfam Protein kinase domain 119 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6589g00014 413 SMART serkin_6 117 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6589g00014 413 SUPERFAMILY Protein kinase-like (PK-like) 113 386 IPR011009 -
Vium6589g00014 413 ProSiteProfiles Protein kinase domain profile. 117 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6589g00014 413 FunFam Serine/threonine-protein kinase GRIK2 107 407 - -
Vium6589g00014 413 Gene3D Transferase(Phosphotransferase) domain 1 216 384 - -
Vium6589g00014 413 ProSitePatterns Protein kinases ATP-binding region signature. 123 146 IPR017441 GO:0005524
Vium6589g00014 413 FunFam Serine/threonine-protein kinase Ssp1 111 213 - -
Vium6589g00014 413 Gene3D Phosphorylase Kinase; domain 1 111 214 - -
Vium6589g00014 413 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 71 381 - -
Vium6589g00014 413 CDD STKc_LKB1_CaMKK 123 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6589g00014 Vium-Chr6589 58289 64017 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6589g00014 123 385 CBL-interacting serine-threonine protein kinases AT5G35410 34.221 8.33e-44 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-LKB Vium6589g00014 Pkinase 1.4e-57 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6589g00014 K00908 - gmx:100776013 762.681