Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6589g00011 ATGGGAGATTATAAGAGATTTTCATTTTCCAAAATGATTGGCTGCTGTGGTTGCTTCGGATTTGTGAAAAAACCTAGACGGCGTCGGGCTAAGCGTAGCATCAACAATTTCCTCTCCCATGGCCTATTATATGATGGAGAAACTGAAGGTGATGAGTCGTTTAGTGGTGATGTTACTAGTAACGCCACCAGTGGAGATGATAATGAGGCGCATGCTGTACGGAATCGTTCCGAGGATATTTTGAACTTTAGAGCTGAGAATGGCATGGTTTGTAGGCCACATCCTGTCAAGGAGACTTTTGAACTTGTTCGCTCAGAGGATGAACATGGGAACAAGATGATAAATGAATACATCCGAGAGTACAAAATTGGTTCTGGAAGCTATGCCAAAGTGGCTCTTTATCGAAGTTGCTTTGACGGAAATCACTATGCAATTAAGGTACTGATTATGAAAATGGTGGAACATCCTAATATAGTCAATCTCATTGAAGTTATTGATGACCCAGAGTCGGATGACTTCTACATGGTACTTGAATATGTGGAAGGCAAATGGGTCTGTGAGGGTACAGGTCGTCCTTGTGCATTAGGTGAAGAGACCGCTAGGAAATACTTGCGTGATATAGTCTCAGGATTAACATATCTCCATGCTCACAATATAGTGCATGGGGATATAAAACCTGATAATCTGTTGATTACTCGTCATGGCAAAGTAAAGATAGTGGATTTCAGTGTCAGCCAGGCTTTTGAGGATGGCAATGATGAACTTCGTCGATCACCTGGCACCCCTGTTTTCACTGCACCAGAATGTTGTTTAGGTCTTACTTATCATGGTAAAGCTTCTGACACGTGGGCCGTAGGAGTTACTTTGTACTGTATGATATTGGGTGAATACCCATTTCTTGGAGATACACTTCAAGATACATATGACAAAATAGTCAATGATCCTTTAGTTCTGCCAGATGACATTAATCCCCAGTTAAAGAACTTAATAGAAGGATTACTGTGCAAAGACCCAGAAAAAAGGATGACATTGGGCGATGTTGCCGAGCATGTCTGGGTTATTGGAAATGATGGGCCGCTTCCTGGGTACTTATGTTGGTGCAAACGCAAGAGCCTGTTGGCTGCTGATTGTGATGAGAGCAATATACCCTTGCTTGATCCACATTGA 1167 0.4225 MGDYKRFSFSKMIGCCGCFGFVKKPRRRRAKRSINNFLSHGLLYDGETEGDESFSGDVTSNATSGDDNEAHAVRNRSEDILNFRAENGMVCRPHPVKETFELVRSEDEHGNKMINEYIREYKIGSGSYAKVALYRSCFDGNHYAIKVLIMKMVEHPNIVNLIEVIDDPESDDFYMVLEYVEGKWVCEGTGRPCALGEETARKYLRDIVSGLTYLHAHNIVHGDIKPDNLLITRHGKVKIVDFSVSQAFEDGNDELRRSPGTPVFTAPECCLGLTYHGKASDTWAVGVTLYCMILGEYPFLGDTLQDTYDKIVNDPLVLPDDINPQLKNLIEGLLCKDPEKRMTLGDVAEHVWVIGNDGPLPGYLCWCKRKSLLAADCDESNIPLLDPH 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6589g00011 388 Pfam Protein kinase domain 122 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6589g00011 388 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 71 356 - -
Vium6589g00011 388 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Vium6589g00011 388 SUPERFAMILY Protein kinase-like (PK-like) 113 361 IPR011009 -
Vium6589g00011 388 Gene3D Transferase(Phosphotransferase) domain 1 107 361 - -
Vium6589g00011 388 ProSiteProfiles Protein kinase domain profile. 117 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6589g00011 388 ProSitePatterns Protein kinases ATP-binding region signature. 123 151 IPR017441 GO:0005524
Vium6589g00011 388 FunFam Serine/threonine-protein kinase GRIK1 isoform A 191 360 - -
Vium6589g00011 388 CDD STKc_LKB1_CaMKK 123 353 - -
Vium6589g00011 388 SMART serkin_6 117 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6589g00011 Vium-Chr6589 58288 64017 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6589g00011 123 360 CBL-interacting serine-threonine protein kinases AT5G35410 32.685 9.95e-40 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-LKB Vium6589g00011 Pkinase 7.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6589g00011 K00908 - gmx:100776013 702.975