Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6589g00005 ATGGCCACGAACCGGTTCATATGCGAAGTGTGCAACAAGGGTTTTCAGAGAGACCAGAACCTGCAGCTGCATCGGCGAGGGCACAATCTGCCGTGGAAGCTGCGGCAAAGATCAAAGGAAGAGGTGAGGAAGAAGGTGTACGTGTGTCCCGAGAAGAGTTGCGTGCACCATGACCCTTGCAGAGCCTTGGGAGACCTCACTGGGATAAAGAAACACTTCAGCAGAAAGCACGGTGAGAAGAAGTGGAAGTGCGAAAAGTGCTCCAAGAAATACGCTGTTCAATCTGACTGGAAAGCCCATAACAAGATTTGTGGGACTAGACAGTACAAATGTGACTGTGGCACAATATTCTCCAGGAAGGACAGCTTTGTAACGCATAGAGCCTTTTGTGACGCTATGGTGGAACAAAGTGGGAGACTTCCGGCAATTTTATCAAACCTCGGAAACGATATTTTGATGAACGCGCAAGGCCCGAGACTAATGCCTCAGGGACTACAACTACACGGGTTTCATTCAGAGTTTGGTGGGCCAGGTTCAGAATCATACATGGAAAATTTTGCTGATGCTGAGCATGTTGAACATAAGCTAAGGTTGCCGATATGGCTAGACCAGACAAATCTTCAACTCAACCATCCTCTTGGCGTTGTTCCAGGCAATTCAAGTGTATTCTCAACTGGAACAACCTTGCCGGAAACAAACAACATGTTCGGGATATCGTCGTCACAGGCACAGTGGACAAATTACCGATACCCCGAAGCATCTTTTAGAAGTGCCAGTGTTTCTGTGCCTCATGGACTGAAGCTAGAGCAAGAAGAAAACAAAGGGGAGTTGTCGCATAGCGTGAGCTCTTTGTACCCAAGTCACATGGAATCTATTAGGATGGGTGGTAATTCACCTTTCGACAACTCTAACTTTGGCCTGTTAGACCCGAACATGTCAAGCACGTCAACCAACAATGTGGTCGAAATTCAGAAGATATTCAAGCAAGGAAACGAGGCTGAAAACTTCAGTCTCATGGTGAGTTCCCAGGCAAGAAGCAACATGGAAAGTGGGTTTTCCTTGAGTTGCAGGAAGAGTTTGGAGCATATGGTGATGCCTGGCATCGAAGAGTGGGAAAGTGGAGAAGCAGAAATAATGGAGAAGCAAGTACATTCGAGTTCAAACACTGAAACGAAAGATTTCATGGGTGTGGGAGATGGGTCAGTGATGAACCTGCAAAGGCAGTTCCTTGGACACTACTGA 1242 0.4702 MATNRFICEVCNKGFQRDQNLQLHRRGHNLPWKLRQRSKEEVRKKVYVCPEKSCVHHDPCRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHNKICGTRQYKCDCGTIFSRKDSFVTHRAFCDAMVEQSGRLPAILSNLGNDILMNAQGPRLMPQGLQLHGFHSEFGGPGSESYMENFADAEHVEHKLRLPIWLDQTNLQLNHPLGVVPGNSSVFSTGTTLPETNNMFGISSSQAQWTNYRYPEASFRSASVSVPHGLKLEQEENKGELSHSVSSLYPSHMESIRMGGNSPFDNSNFGLLDPNMSSTSTNNVVEIQKIFKQGNEAENFSLMVSSQARSNMESGFSLSCRKSLEHMVMPGIEEWESGEAEIMEKQVHSSSNTETKDFMGVGDGSVMNLQRQFLGHY 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6589g00005 413 Gene3D Classic Zinc Finger 61 138 - -
Vium6589g00005 413 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 401 IPR031140 -
Vium6589g00005 413 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Vium6589g00005 413 FunFam Zinc finger protein MAGPIE 2 29 - -
Vium6589g00005 413 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 28 IPR013087 -
Vium6589g00005 413 FunFam protein indeterminate-domain 5, chloroplastic-like 60 139 - -
Vium6589g00005 413 SUPERFAMILY beta-beta-alpha zinc fingers 5 102 IPR036236 -
Vium6589g00005 413 SMART c2h2final6 6 28 IPR013087 -
Vium6589g00005 413 SMART c2h2final6 82 102 IPR013087 -
Vium6589g00005 413 SMART c2h2final6 47 77 IPR013087 -
Vium6589g00005 413 Pfam Zinc-finger double-stranded RNA-binding 6 28 IPR022755 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6589g00005 Vium-Chr6589 24647 26806 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6589g00005 1 139 IDZ Gene Family AT5G66730 85.612 3.78e-92 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium6589g00005 zf-C2H2_jaz 6.8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6589g00005 K25870 - gmx:100811687 644.81