Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6589g00004 ATGATGTCTGGTGAAGCAATAACTGTCCCTTCCAACCTCAGAGATTCCTCGGTTCAAGTTCACGACCCAATCTCAAACCCTAATCCTAACCCTAATCCAAACTCTTCGGTTAAGAGAAAAAGAAGCCTACCCGGAACACCAGATCCGAATGCTGAAGTGATTGCTCTGTCGCCAAAGTCGCTGATGGCCACGAACCGGTTCATATGCGAAGTGTGCAACAAGGGTTTTCAGAGAGACCAGAACCTGCAGCTGCATCGGCGAGGGCACAATCTGCCGTGGAAGCTGCGGCAAAGATCAAAGGAAGAGGTGAGGAAGAAGGTGTACGTGTGTCCCGAGAAGAGTTGCGTGCACCATGACCCTTGCAGAGCCTTGGGAGACCTCACTGGGATAAAGAAACACTTCAGCAGAAAGCACGGTGAGAAGAAGTGGAAGTGCGAAAAGTGCTCCAAGAAATACGCTGTTCAATCTGACTGGAAAGCCCATAACAAGATTTGTGGGACTAGACAGTACAAATGTGACTGTGGCACAATATTCTCCAGGAAGGACAGCTTTGTAACGCATAGAGCCTTTTGTGACGCTATGGTGGAACAAAGTGGGAGACTTCCGGCAATTTTATCAAACCTCGGAAACGATATTTTGATGAACGCGCAAGGCCCGAGACTAATGCCTCAGGGACTACAACTACACGGGTTTCATTCAGAGTTTGGTGGGCCAGGTTCAGAATCATACATGGAAAATTTTGCTGATGCTGAGCATGTTGAACATAAGCTAAGGTTGCCGATATGGCTAGACCAGACAAATCTTCAACTCAACCATCCTCTTGGCGTTGTTCCAGGCAATTCAAGTGTATTCTCAACTGGAACAACCTTGCCGGAAACAAACAACATGTTCGGGATATCGTCGTCACAGGCACAGTGGACAAATTACCGATACCCCGAAGCATCTTTTAGAAGTGCCAGTGTTTCTGTGCCTCATGGACTGAAGCTAGAGCAAGAAGAAAACAAAGGGGAGTTGTCGCATAGCGTGAGCTCTTTGTACCCAAGTCACATGGAATCTATTAGGATGGGTGGTAATTCACCTTTCGACAACTCTAACTTTGGCCTGTTAGACCCGAACATGTCAAGCACGTCAACCAACAATGTGGTCGAAATTCAGAAGATATTCAAGCAAGGAAACGAGGCTGAAAACTTCAGTCTCATGGTGAGTTCCCAGGCAAGAAGCAACATGGAAAGTGGGTTTTCCTTGAGTTGCAGGAAGAGTTTGGAGCATATGGTGATGCCTGGCATCGAAGAGTGGGAAAGTGGAGAAGCAGAAATAATGGAGAAGCAAGTACATTCGAGTTCAAACACTGAAACGAAAGATTTCATGGGTGTGGGAGATGGGTCAGTGATGAACCTGCAAAGGCAGTTCCTTGGACACTACTGA 1425 0.4702 MMSGEAITVPSNLRDSSVQVHDPISNPNPNPNPNSSVKRKRSLPGTPDPNAEVIALSPKSLMATNRFICEVCNKGFQRDQNLQLHRRGHNLPWKLRQRSKEEVRKKVYVCPEKSCVHHDPCRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHNKICGTRQYKCDCGTIFSRKDSFVTHRAFCDAMVEQSGRLPAILSNLGNDILMNAQGPRLMPQGLQLHGFHSEFGGPGSESYMENFADAEHVEHKLRLPIWLDQTNLQLNHPLGVVPGNSSVFSTGTTLPETNNMFGISSSQAQWTNYRYPEASFRSASVSVPHGLKLEQEENKGELSHSVSSLYPSHMESIRMGGNSPFDNSNFGLLDPNMSSTSTNNVVEIQKIFKQGNEAENFSLMVSSQARSNMESGFSLSCRKSLEHMVMPGIEEWESGEAEIMEKQVHSSSNTETKDFMGVGDGSVMNLQRQFLGHY 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6589g00004 474 Pfam Zinc-finger double-stranded RNA-binding 67 89 IPR022755 -
Vium6589g00004 474 Gene3D Classic Zinc Finger 46 118 - -
Vium6589g00004 474 SMART c2h2final6 143 163 IPR013087 -
Vium6589g00004 474 SMART c2h2final6 108 138 IPR013087 -
Vium6589g00004 474 SMART c2h2final6 67 89 IPR013087 -
Vium6589g00004 474 MobiDBLite consensus disorder prediction 1 49 - -
Vium6589g00004 474 FunFam protein indeterminate-domain 12-like 46 114 - -
Vium6589g00004 474 FunFam protein indeterminate-domain 5, chloroplastic-like 121 200 - -
Vium6589g00004 474 SUPERFAMILY beta-beta-alpha zinc fingers 66 163 IPR036236 -
Vium6589g00004 474 Gene3D Classic Zinc Finger 121 199 - -
Vium6589g00004 474 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 21 462 IPR031140 -
Vium6589g00004 474 ProSiteProfiles Zinc finger C2H2 type domain profile. 67 89 IPR013087 -
Vium6589g00004 474 MobiDBLite consensus disorder prediction 1 41 - -
Vium6589g00004 474 ProSitePatterns Zinc finger C2H2 type domain signature. 69 89 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6589g00004 Vium-Chr6589 24168 26806 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6589g00004 25 200 IDZ Gene Family AT3G50700 80.682 2.81e-110 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium6589g00004 zf-C2H2_jaz 8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6589g00004 K25870 - gmx:100811687 727.243