Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6589g00003 ATGATGTCTGGTGAAGCAATAACTGTCCCTTCCAACCTCAGAGATTCCTCGGTTCAAGTTCACGACCCAATCTCAAACCCTAATCCTAACCCTAATCCAAACTCTTCGGTTAAGAGAAAAAGAAGCCTACCCGGAACACCAGCAGATCCGAATGCTGAAGTGATTGCTCTGTCGCCAAAGTCGCTGATGGCCACGAACCGGTTCATATGCGAAGTGTGCAACAAGGGTTTTCAGAGAGACCAGAACCTGCAGCTGCATCGGCGAGGGCACAATCTGCCGTGGAAGCTGCGGCAAAGATCAAAGGAAGAGGTGAGGAAGAAGGTGTACGTGTGTCCCGAGAAGAGTTGCGTGCACCATGACCCTTGCAGAGCCTTGGGAGACCTCACTGGGATAAAGAAACACTTCAGCAGAAAGCACGGTGAGAAGAAGTGGAAGTGCGAAAAGTGCTCCAAGAAATACGCTGTTCAATCTGACTGGAAAGCCCATAACAAGATTTGTGGGACTAGACAGTACAAATGTGACTGTGGCACAATATTCTCCAGGAAGGACAGCTTTGTAACGCATAGAGCCTTTTGTGACGCTATGGTGGAACAAAGTGGGAGACTTCCGGCAATTTTATCAAACCTCGGAAACGATATTTTGATGAACGCGCAAGGCCCGAGACTAATGCCTCAGGGACTACAACTACACGGGTTTCATTCAGAGTTTGGTGGGCCAGGTTCAGAATCATACATGGAAAATTTTGCTGATGCTGAGCATGTTGAACATAAGCTAAGGTTGCCGATATGGCTAGACCAGACAAATCTTCAACTCAACCATCCTCTTGGCGTTGTTCCAGGCAATTCAAGTGTATTCTCAACTGGAACAACCTTGCCGGAAACAAACAACATGTTCGGGATATCGTCGTCACAGGCACAGTGGACAAATTACCGATACCCCGAAGCATCTTTTAGAAGTGCCAGTGTTTCTGTGCCTCATGGACTGAAGCTAGAGCAAGAAGAAAACAAAGGGGAGTTGTCGCATAGCGTGAGCTCTTTGTACCCAAGTCACATGGAATCTATTAGGATGGGTGGTAATTCACCTTTCGACAACTCTAACTTTGGCCTGTTAGACCCGAACATGTCAAGCACGTCAACCAACAATGTGGTCGAAATTCAGAAGATATTCAAGCAAGGAAACGAGGCTGAAAACTTCAGTCTCATGGTGAGTTCCCAGGCAAGAAGCAACATGGAAAGTGGGTTTTCCTTGAGTTGCAGGAAGAGTTTGGAGCATATGGTGATGCCTGGCATCGAAGAGTGGGAAAGTGGAGAAGCAGAAATAATGGAGAAGCAAGTACATTCGAGTTCAAACACTGAAACGAAAGATTTCATGGGTGTGGGAGATGGGTCAGTGATGAACCTGCAAAGGCAGTTCCTTGGACACTACTGA 1428 0.4706 MMSGEAITVPSNLRDSSVQVHDPISNPNPNPNPNSSVKRKRSLPGTPADPNAEVIALSPKSLMATNRFICEVCNKGFQRDQNLQLHRRGHNLPWKLRQRSKEEVRKKVYVCPEKSCVHHDPCRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHNKICGTRQYKCDCGTIFSRKDSFVTHRAFCDAMVEQSGRLPAILSNLGNDILMNAQGPRLMPQGLQLHGFHSEFGGPGSESYMENFADAEHVEHKLRLPIWLDQTNLQLNHPLGVVPGNSSVFSTGTTLPETNNMFGISSSQAQWTNYRYPEASFRSASVSVPHGLKLEQEENKGELSHSVSSLYPSHMESIRMGGNSPFDNSNFGLLDPNMSSTSTNNVVEIQKIFKQGNEAENFSLMVSSQARSNMESGFSLSCRKSLEHMVMPGIEEWESGEAEIMEKQVHSSSNTETKDFMGVGDGSVMNLQRQFLGHY 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6589g00003 475 FunFam protein indeterminate-domain 5, chloroplastic-like 122 201 - -
Vium6589g00003 475 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 21 463 IPR031140 -
Vium6589g00003 475 FunFam protein indeterminate-domain 12-like 47 115 - -
Vium6589g00003 475 SUPERFAMILY beta-beta-alpha zinc fingers 67 164 IPR036236 -
Vium6589g00003 475 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 90 IPR013087 -
Vium6589g00003 475 ProSitePatterns Zinc finger C2H2 type domain signature. 70 90 IPR013087 -
Vium6589g00003 475 SMART c2h2final6 109 139 IPR013087 -
Vium6589g00003 475 SMART c2h2final6 68 90 IPR013087 -
Vium6589g00003 475 SMART c2h2final6 144 164 IPR013087 -
Vium6589g00003 475 MobiDBLite consensus disorder prediction 1 41 - -
Vium6589g00003 475 Pfam Zinc-finger double-stranded RNA-binding 68 90 IPR022755 -
Vium6589g00003 475 Gene3D Classic Zinc Finger 122 200 - -
Vium6589g00003 475 Gene3D Classic Zinc Finger 49 119 - -
Vium6589g00003 475 MobiDBLite consensus disorder prediction 1 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6589g00003 Vium-Chr6589 24161 26806 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6589g00003 25 201 IDZ Gene Family AT3G50700 80.226 1.72e-108 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium6589g00003 zf-C2H2_jaz 8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6589g00003 K25870 - gmx:100811687 722.62