Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6589g00002 ATGGAGGGAGATCAACTGGGCTCTGGTTACTCTTTTCCACCTGGCTTCAGATTCCACCCTTCTGATGAAGAACTCATAGTTCATTACTTGCGAAACAAAATCTGTTCACGTCCACTTCCAGCATCTATTATAGCTGAGATAGATCTCTACAAGTATAACCCGTGGGAGCTACCCAATAAGTCTTTATTTGGAGAAGAAGAGTGGTATTTCTTTAGCCCAAGAGACAGAAAGTACCCAAATGGATTGAGACCAAACAGGGCAGCAGCCTCAGGATACTGGAAGGCAACAGGAACTGACAAGCCAATTCTTTCTTCCATTGGATCAAAGCGCATAGGAGTGAAGAAAGCTCTGGTGTTTTATTCAGGTCGACCTCCTAAGGGATCTAAGACGGATTGGATCATGAATGAGTATAGATTGATTGATACAATTACCAAATCCCCCAGGCTAAAAGGCTCCATGCGGTTGGATGACTGGGTATTATGCCGGGTTCGACATAAAGGCTACTCTTCGAAGATATCAGGTGAAAATCAAGAGAATCCTAGTGAACTAAACCTGTCTGCAAAACTACCGAGGAGTGAAGGATATCCAACAAACATGAACTGTCGGGCTGACATGATCACTGATTATCAATACAAAGACTATCAGATCATAGCCTCTATTCTTGTCGGTGCACCTGTATCTCCCACTGAAAACATGCCAAATATGAGCTTTAAGGGCTGCAAAGGCACCAATCTAGTTTCAGTTTTTGAAGATGGTTTCACTAAAGTGAATTCTCAAATGACATTTCCTTCTTTGGACAGTTACTTCAACCCTCTGACAAGAAAATCCAATGAAGATGAACAGTATGGAAATCTCATCTCTTTTAACAGGAAGTTCAACGCTGAGGACAAAATGGACGAATCACCTAGCAAGGTGTTGGCCAGTAGAGAATTGAACTGCTATAACCAAAACCAGTCTGAAGATGACATTTTCAGCGGGAACCCACCAGACACTGGCATCAATTTTCAAGAGCTTAACGATTTAGTCTTTACAGGAAGTGACAGCCCTCAGATAGCACAAGGATGCAATACCATGTTACAACCGGATACCAGTACAACAAGGGAAATGATTCAAGATCAAGTCACCTCAGAGCACTGA 1137 0.4248 MEGDQLGSGYSFPPGFRFHPSDEELIVHYLRNKICSRPLPASIIAEIDLYKYNPWELPNKSLFGEEEWYFFSPRDRKYPNGLRPNRAAASGYWKATGTDKPILSSIGSKRIGVKKALVFYSGRPPKGSKTDWIMNEYRLIDTITKSPRLKGSMRLDDWVLCRVRHKGYSSKISGENQENPSELNLSAKLPRSEGYPTNMNCRADMITDYQYKDYQIIASILVGAPVSPTENMPNMSFKGCKGTNLVSVFEDGFTKVNSQMTFPSLDSYFNPLTRKSNEDEQYGNLISFNRKFNAEDKMDESPSKVLASRELNCYNQNQSEDDIFSGNPPDTGINFQELNDLVFTGSDSPQIAQGCNTMLQPDTSTTREMIQDQVTSEH 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6589g00002 378 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 12 277 - -
Vium6589g00002 378 FunFam NAC domain-containing protein 72-like 21 171 - -
Vium6589g00002 378 Pfam No apical meristem (NAM) protein 13 139 IPR003441 GO:0003677|GO:0006355
Vium6589g00002 378 Gene3D NAC domain 21 169 IPR036093 GO:0003677|GO:0006355
Vium6589g00002 378 ProSiteProfiles NAC domain profile. 12 166 IPR003441 GO:0003677|GO:0006355
Vium6589g00002 378 SUPERFAMILY NAC domain 9 166 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6589g00002 Vium-Chr6589 3500 7240 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6589g00002 5 177 NAC Transcription Factor Family AT1G69490 65.896 8.04e-82 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium6589g00002 NAM 3.9e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6589g00002 - - vra:106759457 773.852