Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6589g00001 ATGTCTGTCATCGACATTCTCTTCCGCGTCGATACCATTTGTCACAAATATGACAAATACGACATCGACAAGCAGCGCGAGCAAAACGCCTATGGCGACGACGCCTTTGCTCGCCTCTATGCAGCTGTCGAATCCAGCATTCAGACCGCTCTCAACAAATCGGAGGCTGCTTCCACGGAGACCAACAGGGCAGTTGCTGCGGCTTTGAATGCGGAGGTTCGTCGGACAAAGGGTAGACTCATGGACGAGATTCCTAGACTGCGCAAATTACTGCATAAGAAGGTTAAAGGTCTCACAAAAGAGGATATGGCCATTCGTCAGGATCTTGTTCTGGCATTGCCCGAGAGAATCCAAGCAATACCTGATGGTATTTCTGGTGCTTCTATTCAAACTGCAGGATGGACTGCTGACTCATCACAGCCATATGTCAAGTTTGACTCAGAGGGACAACATGATACTGAATATTTCCAACAAAGTGAAGAATCCAGTCAGTTCCGACAAGAGTATGAGATGCGCAGGAAGAAACAGGATGAAGGACTTGATATCATATCGGAGGGATTGGATACCTTGAAGGAACTGGCCCAAGATATGAATGAGGAATTGGATCGGCAAGTTCCACTAATGGACGAAATTGACAAAAAGGTGGATAAGACAACAGCTGAACTGAGAAACACTAACGTGAAGCTGAAGAAAACTCTTAACGAGATAAGGTCTAGTCGAAACTTTGTCATCGACATCATTCTACTCTGTGTTCTTCTTGGAATCGTTATGTATTTATACAAGTAA 786 0.4504 MSVIDILFRVDTICHKYDKYDIDKQREQNAYGDDAFARLYAAVESSIQTALNKSEAASTETNRAVAAALNAEVRRTKGRLMDEIPRLRKLLHKKVKGLTKEDMAIRQDLVLALPERIQAIPDGISGASIQTAGWTADSSQPYVKFDSEGQHDTEYFQQSEESSQFRQEYEMRRKKQDEGLDIISEGLDTLKELAQDMNEELDRQVPLMDEIDKKVDKTTAELRNTNVKLKKTLNEIRSSRNFVIDIILLCVLLGIVMYLYK 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6589g00001 261 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 170 232 IPR000727 -
Vium6589g00001 261 CDD SNARE_Qc 173 231 - -
Vium6589g00001 261 Coils Coil 180 200 - -
Vium6589g00001 261 ProSitePatterns Syntaxin / epimorphin family signature. 176 215 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vium6589g00001 261 Pfam SNARE domain 207 256 IPR000727 -
Vium6589g00001 261 PANTHER SYNTAXIN 60 252 IPR045242 -
Vium6589g00001 261 SMART tSNARE_6 165 232 IPR000727 -
Vium6589g00001 261 SUPERFAMILY SNARE fusion complex 163 231 - -
Vium6589g00001 261 Coils Coil 208 235 - -
Vium6589g00001 261 Gene3D - 169 231 - -
Vium6589g00001 261 FunFam Syntaxin 6 177 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6589g00001 Vium-Chr6589 742 3634 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6589g00001 1 260 SNARE and Associated Proteins AT3G09740 66.031 2.66e-131 370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6589g00001 K08506 - gmx:100777251 439.884