Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6577g00009 ATGTGTGGCGGTGCCATCATCGCTGACTTCATACCCCGCCGTGACCGTTCTCTCGCCGCCTCCGACCTCTGGCCAAACTCCTTCGGAAAGGACGATGATTTCGGCTTCGGTTACTCCCAAATCGCTAACCAACTACCCTCCACTGTCAAAACGGCCCAAGCTCCCAAAGTTAGCGAGAAAGTTGACACTAAGCCAGTGAAAAGGCAGAGGAAGAATCTCTACAGAGGGATTCGGCAGCGCCCTTGGGGCAAATGGGCTGCGGAGATTCGCGATCCTAGAAAAGGGGTTCGTGTCTGGCTGGGTACCTTCAACACTGCGGAAGAAGCTGCAAGGGCCTACGATCGTGAAGCTCGAAAAATCCGCGGCAAAAAAGCTAAGGTGAATTTCCCTAACGAGGACGATGAATATTCCATTCAAGCTCGTAATCCGATTCCACCCCTTCCTTTCGCAACCCAAAAACCAACCCCGTATCAACAACAGTACCGTTGTGATCTCAATAATGCCCCTAGAAATCTCAACTTCGAGTTTGGTTACGACCTGAACCACACTGGAGCATTTTCATCCCACGTGGACACTGTCAACGCTGACTCGGTTGTCGCTTCCGGCGACGAAAATTCAGGGTTAGCGTCCGGTTCAGAGGGCGCTCATTCGACAAACGAGTTCATGGGGTCTGGTGAGAAAGTGAACGGTTATTTCAACGGCACGGCGATTGAGAAGGAGAAAGAGATAGAGGTGATTGAAGCCGAAGAGGAAAAGAACAAATTGCAGGAGCTTTCTGAGGAACTGATGGCTTATGAGAATTACATGAAGTTTTATCAGATTCCGTACTATGATGGACAATCTATGCCACCGAATAATGTTCAGGAAAGTGTTGTCGGGGATCTCTGGAGTTTCGATTGA 900 0.4978 MCGGAIIADFIPRRDRSLAASDLWPNSFGKDDDFGFGYSQIANQLPSTVKTAQAPKVSEKVDTKPVKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDREARKIRGKKAKVNFPNEDDEYSIQARNPIPPLPFATQKPTPYQQQYRCDLNNAPRNLNFEFGYDLNHTGAFSSHVDTVNADSVVASGDENSGLASGSEGAHSTNEFMGSGEKVNGYFNGTAIEKEKEIEVIEAEEEKNKLQELSEELMAYENYMKFYQIPYYDGQSMPPNNVQESVVGDLWSFD 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6577g00009 299 Coils Coil 238 268 - -
Vium6577g00009 299 FunFam Ethylene-responsive transcription factor 2 72 131 - -
Vium6577g00009 299 PANTHER DNA-BINDING DOMAIN 60 217 IPR044808 GO:0003700|GO:0009873
Vium6577g00009 299 SMART rav1_2 73 136 IPR001471 GO:0003700|GO:0006355
Vium6577g00009 299 ProSiteProfiles AP2/ERF domain profile. 73 130 IPR001471 GO:0003700|GO:0006355
Vium6577g00009 299 CDD AP2 74 131 IPR001471 GO:0003700|GO:0006355
Vium6577g00009 299 Gene3D AP2/ERF domain 73 131 IPR036955 GO:0003700|GO:0006355
Vium6577g00009 299 Pfam AP2 domain 74 122 IPR001471 GO:0003700|GO:0006355
Vium6577g00009 299 SUPERFAMILY DNA-binding domain 73 131 IPR016177 GO:0003677
Vium6577g00009 299 PRINTS Ethylene responsive element binding protein signature 74 85 IPR001471 GO:0003700|GO:0006355
Vium6577g00009 299 PRINTS Ethylene responsive element binding protein signature 96 112 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6577g00009 Vium-Chr6577 151846 153284 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6577g00009 1 131 AP2-EREBP Transcription Factor Family AT3G16770 54.412 1.88e-42 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium6577g00009 AP2 8.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6577g00009 K09286 - gmx:100780763 485.723