Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6577g00004 ATGGCGGCATTGTCGTTTTCAGTGGCATCCGTGGTGGAAGATGTGCTTCAACAGCACGGTACTCGCCTCAAAGATCTTGATTTGGAATCTAGAAAAGCGGAAGAAGCTGCATTCAGAAGGTATGAAGCAGCAGGGTGGCTGAGGAAAATGGTTGGAGTTGTTGCAGCTAAGGATTTGCCAGCAGAGCCCTCCGAGGAAGAGTTTAGGCTTGGTTTGAGAAGTGGGATGATTCTCTGTAATGTCCTTAATAAGGTTGAACCTGGTGCTGTACCGAAGGTTGTGGAGAGTCCTCTTAATTCTGCACTAATTCCTGATGGGGCACCCTTATCGGCATATCAGTATTTTGAAAACGTGAGGAACTTTCTGGTGGCTGTGCACGAAATTGGAATTCCTACCTTTGAGTCATCTGATCTTGAACAAGGAGGAAAATCAGCCAGGATTGTGAATAGCGTCTTAGCCCTTAAGTCCTATAGTGAATGGAAACAGACTGGGAGTAATGGTGTGTGGAAATTTGGTGGAACTGTCAAACCCACAATCTCTGCAAAATCTTTTGTGAGAAAAAACTCTGAGCCATTTACTAATTCTTTGTCGAGGAACTCATCCATCAATGAAAAACCCACGAATGCTCTCACATCTGATATCGAGTCTAATAAAATGTCCGGGTCTCATTCTTTGAGTATGCTTGTTCGTGCAGTACTATTAGATAAGAAGCCCGAAGAAGTTCCACTGTTAGTTGAATCAGTCTTAAACAAGGTAGTGGAGGAGTTTGAGCATCGCGTTGCTAGCCAGGGAGAACAGACTAAAAGTTTAAGAGGTGCTGTGTGCCAAGGCAATGGATCTGTATCAAAGTTTGTTATGGCAGATAAAAAGATGGATAACAAGATTCCTACAGTAACAAAGAAAGAAGGATTCCTCCATAAAACCCTCGTAGACGATGAGGAATCAAAAAGACAACTTTTGAAGCAGCAAGTGCTCTTTGATCAACAGCAAAAAGATATTCAAGAACTAAAGCATACAATTCAAACCACCAAAGCTGGTATGAAGTTCCTGCAAATCAAGTTTCATGAGGAGTTCTCCAATCTAGGCAAGCACGTTCATGGCTTAGCTCATGCTGCTTCTGGATATCATAGAGTACTTGAAGAAAATCGCAAACTATACAATCAAGTCCAGGATCTTAAGGGAAGTATTAGAGTGTACTGTCGGGTAAGACCCTTCTTATCAACACAACCAATTTATTCGAGCACAGTGGATAATATAGAAGAGGGATCTATCACAATTAGTATTCCTTCAAAGAATGGGAAAGGGCGCAGATCCTTCAACTTCAACAAAGTATTTGGACCGGCTGCGTCCCAAGCGGAGGTCTTCTCTGATATGCAGCCACTCATTAGGTCTGTTCTTGATGGTTACAATGTTTGCATATTTGCTTATGGTCAAACAGGATCGGGAAAAACATACACAATGACTGGACCGAAAGAGATCACAGAGAAAAGCCAAGGTGTAAATTACAGGGCCCTAAGTGATTTATTTCTTACAGCAGATCAAAGACGAGACACTTTTTGCTATGATGTGTCTGTTCAAATGATTGAGATTTACAATGAGCAAGTCAGAGATCTATTGGTTACCGATGGATCAAACAAAAGGTTGGAAATTCGTAGTAATTCTCATAGAGGGCTCAGTGTACCAGATGCATGCCTAGTTCCAGTATCATCAACAAGAGATGTTATTGAACTGATGAACCTAGGCCAAAGGAATCGTGCAGTTGGAGCCACAGCCCTTAATGACCGTAGTAGCAGATCACACAGTTGCTTGACTGTTCATGTTCAAGGAAGAGATTTAACGTCAGGAACTATTCTTCGTGGATGCATGCATCTGGTTGACTTGGCAGGAAGTGAGAGAGTTGACAAATCCGAGGCCACAGGAGACAGGTTGAAAGAAGCTCAGCATATTAACAAATCTCTTTCAGCTTTGGGTGATGTCATTGCTTCCCTTGCTCAGAGGAACCAACATGTTCCTTACAGAAATAGTAAGCTCACACAGCTACTCCAAGATTCACTTGGAGGACAGGCCAAAACACTTATGTTTGTTCACATCAGTCCAGAGGTCGATGCAGTTGGAGAAACAATAAGCACCTTAAAGTTTGCAGAAAGAGTTGCCACTGTTGAACTTGGTGCTGCTCGAGTAAACAAGGATGGGGAAGATGTCAAAGAGCTCAAAGAACAGATAGCCAGCCTAAAAGCAGCATTGGCACGAAAGGACGGTGAATCTCAGCATTCTTTGTCTGGAAGTTCTGAAAAATATAGGACAATGGCTAGTGAGTCATCGCCTTATCATGCAAACCAGAGGGGAGTTGTGAGTGATCGCCTAGGATGCCGGCAACCAATGATTGATGTGGGCAACATAGAGCTTCACAGCAATACCCCATTGAGACAAAAAAGTCAAAGCTATGATTTTGATGAGATGTCTACGAATTCACCACCCTGGCCACCAGTGAACAATCCTGGACAAAACTACCGGGAAGATGACAGAGAAACTGTTTCAGGAGAGTGGGTTGATAAAGTCATGGTAAACAAGCAAGATGCAAACAAAACTGACAACATCTTAGGCTGTTGGGAAACAGACAGTGGGAACTTATCCGAGGTGATTTATCAGAAATATCTCCAAGATTCTTCTAAAATGTACTCAGATGGATCCTACAACATGTTCATGGGGCACAACCAATTTAAGATTGCTGGTTCAGATGACATGGATGATCTTGATGATACAACCACCGATTCCTCAGAGCCTGACTTGCTTTGGCAATTTAATCATTCCAAGCTTACCACCATAGCCAATGGTAATGGATCAAAGGCTAGGAGACCTGTCTCTAAGCCAACAAATAGCCCAATATTGAGCAAGAATAATTCTTCTCTTGGTCCTTCACCTTCACGAAAACAACCAAATGGCGTGTTACATCGAACAGGAAGACATCCAGCTCCAGTGGACATGAAACGCAAAACTGGTAGTAGAAAGTAA 3012 0.4266 MAALSFSVASVVEDVLQQHGTRLKDLDLESRKAEEAAFRRYEAAGWLRKMVGVVAAKDLPAEPSEEEFRLGLRSGMILCNVLNKVEPGAVPKVVESPLNSALIPDGAPLSAYQYFENVRNFLVAVHEIGIPTFESSDLEQGGKSARIVNSVLALKSYSEWKQTGSNGVWKFGGTVKPTISAKSFVRKNSEPFTNSLSRNSSINEKPTNALTSDIESNKMSGSHSLSMLVRAVLLDKKPEEVPLLVESVLNKVVEEFEHRVASQGEQTKSLRGAVCQGNGSVSKFVMADKKMDNKIPTVTKKEGFLHKTLVDDEESKRQLLKQQVLFDQQQKDIQELKHTIQTTKAGMKFLQIKFHEEFSNLGKHVHGLAHAASGYHRVLEENRKLYNQVQDLKGSIRVYCRVRPFLSTQPIYSSTVDNIEEGSITISIPSKNGKGRRSFNFNKVFGPAASQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPKEITEKSQGVNYRALSDLFLTADQRRDTFCYDVSVQMIEIYNEQVRDLLVTDGSNKRLEIRSNSHRGLSVPDACLVPVSSTRDVIELMNLGQRNRAVGATALNDRSSRSHSCLTVHVQGRDLTSGTILRGCMHLVDLAGSERVDKSEATGDRLKEAQHINKSLSALGDVIASLAQRNQHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEVDAVGETISTLKFAERVATVELGAARVNKDGEDVKELKEQIASLKAALARKDGESQHSLSGSSEKYRTMASESSPYHANQRGVVSDRLGCRQPMIDVGNIELHSNTPLRQKSQSYDFDEMSTNSPPWPPVNNPGQNYREDDRETVSGEWVDKVMVNKQDANKTDNILGCWETDSGNLSEVIYQKYLQDSSKMYSDGSYNMFMGHNQFKIAGSDDMDDLDDTTTDSSEPDLLWQFNHSKLTTIANGNGSKARRPVSKPTNSPILSKNNSSLGPSPSRKQPNGVLHRTGRHPAPVDMKRKTGSRK 1003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6577g00004 1003 FunFam Kinesin-like protein KIN-14I isoform A 390 762 - -
Vium6577g00004 1003 Pfam Kinesin motor domain 401 719 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium6577g00004 1003 ProSiteProfiles Kinesin motor domain profile. 395 720 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium6577g00004 1003 SMART ch_5 39 157 IPR001715 GO:0005515
Vium6577g00004 1003 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 395 752 IPR027417 -
Vium6577g00004 1003 Coils Coil 727 754 - -
Vium6577g00004 1003 MobiDBLite consensus disorder prediction 942 1003 - -
Vium6577g00004 1003 PANTHER KINESIN-LIKE PROTEIN KLP-3 44 949 IPR027640 GO:0003777|GO:0007018
Vium6577g00004 1003 PRINTS Kinesin heavy chain signature 590 607 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium6577g00004 1003 PRINTS Kinesin heavy chain signature 670 691 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium6577g00004 1003 PRINTS Kinesin heavy chain signature 468 489 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium6577g00004 1003 PRINTS Kinesin heavy chain signature 621 639 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium6577g00004 1003 Coils Coil 16 36 - -
Vium6577g00004 1003 MobiDBLite consensus disorder prediction 989 1003 - -
Vium6577g00004 1003 SUPERFAMILY Calponin-homology domain, CH-domain 40 170 IPR036872 -
Vium6577g00004 1003 Gene3D - 24 182 IPR036872 -
Vium6577g00004 1003 ProSiteProfiles Calponin homology (CH) domain profile. 37 159 IPR001715 GO:0005515
Vium6577g00004 1003 MobiDBLite consensus disorder prediction 816 840 - -
Vium6577g00004 1003 Gene3D Kinesin motor domain 390 761 IPR036961 -
Vium6577g00004 1003 CDD KISc_C_terminal 393 722 - -
Vium6577g00004 1003 CDD CH_AtKIN14-like 39 156 - -
Vium6577g00004 1003 SMART kinesin_4 393 728 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium6577g00004 1003 Pfam Calponin homology (CH) domain 40 159 IPR001715 GO:0005515
Vium6577g00004 1003 MobiDBLite consensus disorder prediction 942 980 - -
Vium6577g00004 1003 FunFam Kinesin-like protein KIN-14I isoform A 24 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6577g00004 Vium-Chr6577 84423 90405 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6577g00004 383 720 Calmodulin-binding Proteins AT5G65930 43.642 1.68e-77 275