Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6576g00004 TTCACTTTCAGAAAACAAGATGTGTGTGAGAAGAAGCAGGCGGATCCGGTGCATCGACCCATCACAAGGAGGTTTGCTGCACAGATTGCCAGCACACAGCAAAATCGTGCTGAGGGAACCAAGAAGTCAAACTTGGGAAATTCGAATGGATTTGGAGAGGTTATATTTGTTGATGATGAACACAAGCCAACGGATGACCAACCAGTGCCAATGACTTTAGAGCAGACAGAGCCAGTGCATAATGAATTAGATCAGATGGAGGAAGTTGAGATGGAGGATATAATTGATGAGACAGTTTTGGACATTGATATATGTGACGCAAATAATCCCCTTGCAGTGGTGGACTATATTGAAGATCTATACGCCTACTACAGAAAAATGGAGGGTTCTAGCTGTGTCTCACCCAATTATATGACACAGCAGTTTGACATTAATGAAAGGATGAGGGCTATACTTATTGACTGGCTTATTGAGGTGCACGACAAATTTGACCTCATGCACGAGACATTGTTTCTCACATTTAATCTCATAGATAGATTTTTGGCAAAGCAGACAGTTGTAAGAAAGAAGCTTCAGTTGGTTGGACTTGTTGCAATGCTTCTGGCATGCAAGTATGAAGAAGTTTCAGTTCCTGTGGTGGGGGATCTAATTCTCATATCAGACAAAGCATACACAAGGAAGGAAGTTCTGGAGATGGAGAAGTTGATGGTCAACACATTGCAGTTTAACATGTCTGTGCCAACAGCATATGTTTTTATGAAAAGATTCCTAAAGGCAGCTCAAGCAGACAGGAAGCTTGAGCTATTGGCTTTCTTCCTAGTAGAGCTATCTCTAGTGGAATATGAGATGCTGAAGTTCCCTCCATCCTTGCTAGCAGCAGCTGCTATTTATACAGCTCAATGCTCCATTTATGGCTTGAAACAATGGAGTAAAACATGTGAATGGCACTCCAATTACTCAGAAGATCAGCTATTAGAGTGCTCTACTTCGATGGTTGATTTTCATCAGAAGGCTGGAAAAGGGAAACTTACTGGGGTACATAGGAAGTACTGTTCATCTAAATTTAACTACACTGCAAAATGTGAACCCGCACATTTTCTTCTTGAGGACTCGTTGTAG 1119 0.4164 FTFRKQDVCEKKQADPVHRPITRRFAAQIASTQQNRAEGTKKSNLGNSNGFGEVIFVDDEHKPTDDQPVPMTLEQTEPVHNELDQMEEVEMEDIIDETVLDIDICDANNPLAVVDYIEDLYAYYRKMEGSSCVSPNYMTQQFDINERMRAILIDWLIEVHDKFDLMHETLFLTFNLIDRFLAKQTVVRKKLQLVGLVAMLLACKYEEVSVPVVGDLILISDKAYTRKEVLEMEKLMVNTLQFNMSVPTAYVFMKRFLKAAQADRKLELLAFFLVELSLVEYEMLKFPPSLLAAAAIYTAQCSIYGLKQWSKTCEWHSNYSEDQLLECSTSMVDFHQKAGKGKLTGVHRKYCSSKFNYTAKCEPAHFLLEDSL 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6576g00004 372 Gene3D - 119 359 - -
Vium6576g00004 372 SMART cyclin_7 154 238 IPR013763 -
Vium6576g00004 372 SMART cyclin_7 251 333 IPR013763 -
Vium6576g00004 372 Pfam Cyclin, N-terminal domain 119 245 IPR006671 -
Vium6576g00004 372 MobiDBLite consensus disorder prediction 30 49 - -
Vium6576g00004 372 CDD CYCLIN_AtCycB-like_rpt1 97 242 - -
Vium6576g00004 372 CDD CYCLIN_AtCycB-like_rpt2 247 363 - -
Vium6576g00004 372 FunFam G2/mitotic-specific cyclin-1 235 359 - -
Vium6576g00004 372 PIRSF Cyclin_A_B_D_E 2 372 IPR046965 GO:0016538|GO:0044772
Vium6576g00004 372 ProSitePatterns Cyclins signature. 149 180 IPR006671 -
Vium6576g00004 372 SUPERFAMILY Cyclin-like 108 244 IPR036915 -
Vium6576g00004 372 Gene3D - 133 245 - -
Vium6576g00004 372 PANTHER CYCLINS 75 337 IPR039361 -
Vium6576g00004 372 Pfam Cyclin, C-terminal domain 247 362 IPR004367 -
Vium6576g00004 372 SMART Cyclin_C_2 247 364 IPR004367 -
Vium6576g00004 372 SUPERFAMILY Cyclin-like 246 364 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6576g00004 Vium-Chr6576 33374 36548 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6576g00004 5 368 Core Cell Cycle Gene Families AT1G20610 61.789 1.62e-161 457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6576g00004 K21777 - gmx:100798068 670.233