Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6576g00001 ATGGATTTGTCATTAGAAAGCATAATCACGAGCTTATCATCAGAAATACCAAGACCACTTCACTGCTACAGCATGACAACAATGGGGATGGATCGACATTTTTCCTACAACATATCTCTGTCAGGAGAAAATGACATCAATGTTCTGATGCCTGGAGCTCTTTTCAGATTCACCATTAGAGTTTTTTATGAAAATACTTCAATTCCAGAACTAGGTCGTTCTTCTACTCTTATATCGATCCAAACCTTTTTCCAAGAAGGTCCAGATTTCTTGCGGACACTGTTACGGCCACTGTCATCATCGCTCACACATTTTGGCACTGACATCATTGAAACAATAGTAAACGTGACTGCTGATGAAATTCTTGAAATCTTCCAAATTAATAATGCTGCTCCTTCTTCTTCGGAATCTCAACCCCTAGAAGTTCCTCTGTGGATTGTGATCAATATTACTCATAACAGCATGCATGCAGCAATACAAGATCCTCTAAGAACGGTTACAGCATCCGAAGAAGCCATTGACACGTTGTTGAAGAAGTCTACAGTGTTACAGACTGAGTGTTGTTGTTGCATATGCTTGGATGAATTCGATCTCAATGCTGAGTGCTACACACTTCCATGTCAACACTTCTTTCATCAAAAGTGTATTACTCGCTGGCTACACACCAGTCTGACATGTCCCATGTGTCGCCAACCTGTGCGAACCCTAAAAGATTAG 717 0.4073 MDLSLESIITSLSSEIPRPLHCYSMTTMGMDRHFSYNISLSGENDINVLMPGALFRFTIRVFYENTSIPELGRSSTLISIQTFFQEGPDFLRTLLRPLSSSLTHFGTDIIETIVNVTADEILEIFQINNAAPSSSESQPLEVPLWIVINITHNSMHAAIQDPLRTVTASEEAIDTLLKKSTVLQTECCCCICLDEFDLNAECYTLPCQHFFHQKCITRWLHTSLTCPMCRQPVRTLKD 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6576g00001 238 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 167 237 IPR013083 -
Vium6576g00001 238 Pfam Ring finger domain 189 230 IPR001841 -
Vium6576g00001 238 SMART ring_2 189 229 IPR001841 -
Vium6576g00001 238 CDD RING-H2_PA-TM-RING 188 230 - -
Vium6576g00001 238 ProSiteProfiles Zinc finger RING-type profile. 189 230 IPR001841 -
Vium6576g00001 238 SUPERFAMILY RING/U-box 177 235 - -
Vium6576g00001 238 PANTHER SI:CH211-59O9.10 75 235 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6576g00001 112 230 C3H Transcription Factor Family AT3G15740 28.689 2.23e-12 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6576g00001 - K19039 vum:124843592 472.626