Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6575g00002 ATGTTTCTCTTACAGTGTCTGCCTAATTTGAGAAATTTGGATCTGAGTCACTCCAAAAATCTTATTGAGGTGTCAGACTTAAGTGAGGTTCCACGTCTTACGGATCTTAATCTCAAAGGATGTATACAACTAGTCCACATCCATCCATCCATTGGTATTCTAAGAGACCTTCGTCGTTTGAATTTGAAGAATTGTAAAAATCTTGTCCTTAATCTGAATATCCTTTTTGGGATCAGTTCTCTTAAGACCTTAAATATCTCAGGCTGTTCACAATTACTTAATAGTAAGATGTTAATGGACCCAAGTGACACAAAACATTTGGAGAAAGTTGATAAAAATACAAATATCATCCAATTGCCAACATCCTCTGTATACAAACTTCTAATGTTGCCTTTCCATTTTTTCTACCCTCCAAAACCTCAAGTTTCACTTGGTTTGTTATCGTCTTTTTTGTCTTTCTCTGTCCCGTGTTTGTGTGATCTTGACATAAGCTTCTGTAATCTACTTCAAATCCCAGATGAAATTGGGAACTTACGTTCTTTAGAAATATTAAATTTGGGGGGAAACAAATTTGTGACACTACCAAGCACCATCAAGCAACTTTCCAATCTTCGATGTTTGAACTTGACACAGTGCAAGGAGTTAAAATATTTGCCCGAGCTTCCAAAAATACAAGAAATTACAATTGGCAGATGCTATAGCTTATACACTTTTGACTGCTCCAAGTTGAGTGATATGGAACACTGTTATAGCATAGTTTTTTCTTGTTGGATGACGAAAAATCTTGAGGATTACTTGGTCCCTCGGATGGAAATTGTTATTCCTGGAAGTGAAATTCCAAAATGGTTCAGTAAACAAAACGCAAGTACATCAATAAGTATGGACCCATCTGCTGTTATAGATGACCCAAATTGGATAGGTGTTTCCATTTGTGCTCTATTTGTCACACACGAAGGTCCTATGAATTTGGATGAAAGAGATTATCCTACAAACGATTATCTTTATTACGGTGTCAATAATTTCATCAACTTTGGGCTAAAAATGTATTCAAGAGTTTCTCTAAAATTCAAGAAAGATCTGGTGACACTTGGGTTAGATTATTTGTTGATAGTGCTTTACTCTCGACAAGATTTCATTCATCTTCTAAATAGACATTCAGATACCATGCATGATCTTCAAGCAGTTAAATTTGAAACTTGGGTTGAGAGTCTTCCAGGATTAGGTTTTATGGTGAAGAAGTGCGGGTATCGTTGGGTATTTAAGGAGGATCTTCAACAATTCAACTCAGACAAGTTTTTCAGCAGAAATTCTTCATCACGGAAGAGGAAGCTTCTAACAAGTGAGTAA 1347 0.3601 MFLLQCLPNLRNLDLSHSKNLIEVSDLSEVPRLTDLNLKGCIQLVHIHPSIGILRDLRRLNLKNCKNLVLNLNILFGISSLKTLNISGCSQLLNSKMLMDPSDTKHLEKVDKNTNIIQLPTSSVYKLLMLPFHFFYPPKPQVSLGLLSSFLSFSVPCLCDLDISFCNLLQIPDEIGNLRSLEILNLGGNKFVTLPSTIKQLSNLRCLNLTQCKELKYLPELPKIQEITIGRCYSLYTFDCSKLSDMEHCYSIVFSCWMTKNLEDYLVPRMEIVIPGSEIPKWFSKQNASTSISMDPSAVIDDPNWIGVSICALFVTHEGPMNLDERDYPTNDYLYYGVNNFINFGLKMYSRVSLKFKKDLVTLGLDYLLIVLYSRQDFIHLLNRHSDTMHDLQAVKFETWVESLPGLGFMVKKCGYRWVFKEDLQQFNSDKFFSRNSSSRKRKLLTSE 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6575g00002 448 Gene3D Ribonuclease Inhibitor 141 293 IPR032675 -
Vium6575g00002 448 Pfam Leucine rich repeat 160 212 IPR001611 GO:0005515
Vium6575g00002 448 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57 154 249 - -
Vium6575g00002 448 Pfam C-JID domain 274 424 IPR045344 -
Vium6575g00002 448 SUPERFAMILY RNI-like 4 233 - -
Vium6575g00002 448 Gene3D Ribonuclease Inhibitor 2 113 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6575g00002 Vium-Chr6575 2670 4511 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6575g00002 7 204 WRKY Transcription Factor Family AT4G12020 29.126 3.12e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6575g00002 - - vum:124843591 813.913