Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6575g00001 ATGTTTCTCTTACAGTGTCTGCCTAATTTGAGAAATTTGGATCTGAGTCACTCCAAAAATCTTATTGAGGCGCCAGACTTAAGTGAGGTTCCACGTCTTACGGATCTTGATCTCAAAGGATGTATACAACTAGTCCACATCCATCCATCCATTGGTATTCTAAGAGACCTTCGTCGTTTGAATTTGAAAAGTTGTAAAAATCTTATTGAGGTGTCAGACTTAAGTGAGGTTCCACGTCTTACGGATCTTAATCTCAAAGGATGTATACAACTAGTCCACATCCATCCATCCATTGGTATTCTAAGAGACCTTCGTCGTTTGAATTTGAAGAATTGTAAAAATCTTGTCCTTAATCTGAATATCCTTTTTGGGATCAGTTCTCTTAAGACCTTAAATATCTCAGGCTGTTCACAATTACTTAATAGTAAGATGTTAATGGACCCAAGTGACACAAAACATTTGGAGAAAGTTGATAAAAATACAAATATCATCCAATTGCCAACATCCTCTGTATACAAACTTCTAATGTTGCCTTTCCATTTTTTCTACCCTCCAAAACCTCAAGTTTCACTTGGTTTGTTATCGTCTTTTTTGTCTTTCTCTGTCCCGTGTTTGTGTGATCTTGACATAAGCTTCTGTAATCTACTTCAAATCCCAGATGAAATTGGGAACTTACGTTCTTTAGAAATATTAAATTTGGGGGGAAACAAATTTGTGACACTACCAAGCACCATCAAGCAACTTTCCAATCTTCGATGTTTGAACTTGACACAGTGCAAGGAGTTAAAATATTTGCCCGAGCTTCCAAAAATACAAGAAATTACAATTGGCAGATGCTATAGCTTATACACTTTTGACTGCTCCAAGTTGAGTGATATGGAACACTGTTATAGCATAGTTTTTTCTTGTTGGATGACGAAAAATCTTGAGGATTACTTGGTCCCTCGGATGGAAATTGTTATTCCTGGAAGTGAAATTCCAAAATGGTTCAGTAAACAAAACGCAAGTACATCAATAAGTATGGACCCATCTGCTGTTATAGATGACCCAAATTGGATAGGTGTTTCCATTTGTGCTCTATTTGTCACACACGAAGGTCCTATGAATTTGGATGAAAGAGATTATCCTACAAACGATTATCTTTATTACGGTGTCAATAATTTCATCAACTTTGGGCTAAAAATGTATTCAAGAGTTTCTCTAAAATTCAAGAAAGATCTGGTGACACTTGGGTTAGATTATTTGTTGATAGTGCTTTACTCTCGACAAGATTTCATTCATCTTCTAAATAGACATTCAGATACCATGCATGATCTTCAAGCAGTTAAATTTGAAACTTGGGTTGAGAGTCTTCCAGGATTAGGTTTTATGGTGAAGAAGTGCGGGTATCGTTGGGTATTTAAGGAGGATCTTCAACAATTCAACTCAGACAAGTTTTTCAGCAGAAATTCTTCATCACGGAAGAGGAAGCTTCTAACAAGTGAGTAA 1488 0.3636 MFLLQCLPNLRNLDLSHSKNLIEAPDLSEVPRLTDLDLKGCIQLVHIHPSIGILRDLRRLNLKSCKNLIEVSDLSEVPRLTDLNLKGCIQLVHIHPSIGILRDLRRLNLKNCKNLVLNLNILFGISSLKTLNISGCSQLLNSKMLMDPSDTKHLEKVDKNTNIIQLPTSSVYKLLMLPFHFFYPPKPQVSLGLLSSFLSFSVPCLCDLDISFCNLLQIPDEIGNLRSLEILNLGGNKFVTLPSTIKQLSNLRCLNLTQCKELKYLPELPKIQEITIGRCYSLYTFDCSKLSDMEHCYSIVFSCWMTKNLEDYLVPRMEIVIPGSEIPKWFSKQNASTSISMDPSAVIDDPNWIGVSICALFVTHEGPMNLDERDYPTNDYLYYGVNNFINFGLKMYSRVSLKFKKDLVTLGLDYLLIVLYSRQDFIHLLNRHSDTMHDLQAVKFETWVESLPGLGFMVKKCGYRWVFKEDLQQFNSDKFFSRNSSSRKRKLLTSE 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6575g00001 495 Pfam Leucine rich repeat 207 259 IPR001611 GO:0005515
Vium6575g00001 495 Gene3D Ribonuclease Inhibitor 189 340 IPR032675 -
Vium6575g00001 495 Gene3D Ribonuclease Inhibitor 3 164 IPR032675 -
Vium6575g00001 495 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57 201 296 - -
Vium6575g00001 495 Pfam C-JID domain 321 471 IPR045344 -
Vium6575g00001 495 SUPERFAMILY L domain-like 4 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6575g00001 Vium-Chr6575 2670 4511 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6575g00001 54 251 WRKY Transcription Factor Family AT4G12020 28.155 4.78e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6575g00001 - - vum:124843591 936.406