Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6570g00006 ATGGCCATCTCAGTACCCAGTAGGCAACTATTCATTGATGGAGAGTGGAAAGTCCCCGTCCACAACAACCGGATTCCCATCATCAATCCCGCGACCGAAGACATCATAGGCGATATCCCTGCCGGTACCAAGGAAGATATTGACCTTGCTGTCGATGCTGCTAAAAGAGCCTTGTCCCGGAACAAAGGCAGAGATTGGTCATCAGCTTCTGGTTCTGTTCGTGCTCGTTATCTTCGAGCCATCGCTTCAAAGATAACGGAGAAAAAGGATGAACTGGGAAAGCTTGAAGCAATCGATAGTGGAAAACCACTAGAGGAAGCACTGGCAGACCTGGATGATGTTATTGCTTGTTTTAACTACTATGCTGAGCTTGCAGAAGGGTTGGATGCAAAGCAAAAGGCTCCTGTATCCCTCCCTATGGAAACTTTCAAGAGTTATATTCTCAAGGAGCCCATTGGGGTTGTTGCATTAATTACTCCATGGAACTATCCTCTCTTAATGGCTACATGGAAAGTTGCTCCTGCTCTGGCTGCTGGTTGTGCTGCAATATTGAAGCCATCTGAATTGGCATCTGTGACATGTTTGGAGCTGGCTGAAATATGCAGAGAAGTGAACCTTCCTCCAGGGGTATTAAATGTTGTTACTGGATTAGGAAATGATGCCGGTGCTCCTTTGGCATCTCATCCTGATGTAGACAAGGTTGCCTTTACTGGAAGCTCTTTAACTGGGAGCAAGATTATGTCAGCTGCAGCAGAGCTGACCAAGCCTGTTTCTCTAGAGCTTGGTGGAAAAAGCCCAATCATTGTTTTTGAGGATGTTGACCTTGACAAGACTGCTGAATGGACAATCTTTGGCTGCTTCTTTACAAATGGTCAGATTTGCAGTGCAACATCTCGACTTATCGTGCATGAAAGTATAGCAACAGAATTTGTGGATAAACTTGTGAAATGGGCCAAAAACATCAAAATTTCAAATCCCTTGGAAGAAGGCTGCAGGCTAGGCCCTATTGTTAGTGAAGGACAGTACAAAAAGGTATTGAATTTCATTTCAACTGCTAAGAGTGAAGGTGCAACAATTTTGACAGGAGGGTCTCGTCCAAAGCATTTGAAAAGGGGATACTTTGTTGAACCAACCATCATCAGTGATGTGACTACCTCAATGCAAATTTGGAGAGAAGAAGTTTTTGGACCTGTACTCTCTGTGAAAACATTCAGTACCGAGGAAGAAGCTATTGAACTAGCAAATGACACCCAATACGGCTTAGGGTCTGCCGTAATGTCAAAAGATCTAGAAAGATGTGAGCGTATATCTCAGGCTATTAAAGCTGGAATTGTATGGATAAATTGTGCTCAACCAAGCTTCATTCAAGCCCCATGGGGAGGCATAAAACGAAGTGGCTTTGGTCGTGAATTAGGAGAATGGGGTCTAGAGAACTATTTAAGTGTGAAGCAAGTGACCAAGTACATATCTGATGAACAGTGGGGCTGGTATCAGTCTCCTTCAAAGCTCTGA 1512 0.4411 MAISVPSRQLFIDGEWKVPVHNNRIPIINPATEDIIGDIPAGTKEDIDLAVDAAKRALSRNKGRDWSSASGSVRARYLRAIASKITEKKDELGKLEAIDSGKPLEEALADLDDVIACFNYYAELAEGLDAKQKAPVSLPMETFKSYILKEPIGVVALITPWNYPLLMATWKVAPALAAGCAAILKPSELASVTCLELAEICREVNLPPGVLNVVTGLGNDAGAPLASHPDVDKVAFTGSSLTGSKIMSAAAELTKPVSLELGGKSPIIVFEDVDLDKTAEWTIFGCFFTNGQICSATSRLIVHESIATEFVDKLVKWAKNIKISNPLEEGCRLGPIVSEGQYKKVLNFISTAKSEGATILTGGSRPKHLKRGYFVEPTIISDVTTSMQIWREEVFGPVLSVKTFSTEEEAIELANDTQYGLGSAVMSKDLERCERISQAIKAGIVWINCAQPSFIQAPWGGIKRSGFGRELGEWGLENYLSVKQVTKYISDEQWGWYQSPSKL 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6570g00006 503 FunFam NAD/NADP-dependent betaine aldehyde dehydrogenase 12 277 - -
Vium6570g00006 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 24 483 IPR016162 GO:0016491
Vium6570g00006 503 FunFam Betaine aldehyde dehydrogenase 263 454 - -
Vium6570g00006 503 Pfam Aldehyde dehydrogenase family 22 485 IPR015590 GO:0016491
Vium6570g00006 503 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 259 266 IPR029510 GO:0016491
Vium6570g00006 503 SUPERFAMILY ALDH-like 5 486 IPR016161 GO:0016491
Vium6570g00006 503 CDD ALDH_F10_BADH 27 487 - -
Vium6570g00006 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 267 458 IPR016163 GO:0016620
Vium6570g00006 503 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 287 298 IPR016160 GO:0016491
Vium6570g00006 503 PANTHER ALDEHYDE DEHYDROGENASE 5 502 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6570g00006 Vium-Chr6570 27580 34241 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6570g00006 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 75.848 0.0 824