Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6570g00002 ATGTCTACCTCCTCAACCCACCACACCTATAGCCGAAAGCAGAAATCACTCGGCTTATTGTGTACCAATTTTCTCAGGCTTTACAACAGAGATGGCGTCCGCTTAATTGGTCTCGATGACGCCGCATCGCGATTAGGTGTTGAGAGACGCCGGATCTACGACATCGTCAATGTCCTAGAGAGCGTCGGGGTGCTGGCCAGAAAAGCTAAGAATCAGTATACCTGGAAAGGCTTTTCTGCGATTCCCGAGGCTTTGCAAGAACTCAAGGAAGATGGTTTGAAAGAGAATCCTGGATCTTTTGATGACTCCAATGACAGCGCGAAAGTGTCTGATGATGAGGATGAGGAGGAAACTTCTCCCATTGTCAATACTGAAAGTCAGAATGACAAGGAAATTCCTGATTCCACCGCTCTTGGTCTATCCTCTAAGAATGAAAACAGAAGGGAAAAATCTCTGGCATTGCTTACTCAGAATTTTGTTAAGCTTTTTATCTGCTCTAGCATCGAAATGATCTCCCTTGACGAAGCTGCAAAGCTGTTGCTTGGAAATGCTAATACATCAATAATGAGGACTAAAGTCAGACGCCTATATGATATTGCAAATGTGTTATCCTCCATGAACCTAATCGAGAAGACCCATACAACAAATACAAGAAAACCAGCATTTAGATGGTTGGGATGGAGAGGTAAAGCATGGAGTGAATCAGTTGACTTAGCTCACAATTCAAATTTCAACGAGCCAGGGAAAAGAAAGTTTGGAACTGACATCACAAACACAAGTTTTAAAAGGAGCAAAACTGATTTTCTCTTGGATGGCCACACCTGTAAAATGCAAAATCAACAAGAAAATATCAGTTACAGAGTACAGCTCGACAGAAGCAACTTTGAAAAAGATGCAAAACAAACTTCAAAGGGCTATCAGTTTGGTCCTTTCGCTCCAGCTTATGTGCCCAAAGTCGGAACCTCTGAAAATAATAGCGGGAATCAGGTGCATGACTGGGACAGCCTCGCACAGGTTCATCGTCCTCAGTATCAAAACCAAGGTATCTAG 1050 0.4305 MSTSSTHHTYSRKQKSLGLLCTNFLRLYNRDGVRLIGLDDAASRLGVERRRIYDIVNVLESVGVLARKAKNQYTWKGFSAIPEALQELKEDGLKENPGSFDDSNDSAKVSDDEDEEETSPIVNTESQNDKEIPDSTALGLSSKNENRREKSLALLTQNFVKLFICSSIEMISLDEAAKLLLGNANTSIMRTKVRRLYDIANVLSSMNLIEKTHTTNTRKPAFRWLGWRGKAWSESVDLAHNSNFNEPGKRKFGTDITNTSFKRSKTDFLLDGHTCKMQNQQENISYRVQLDRSNFEKDAKQTSKGYQFGPFAPAYVPKVGTSENNSGNQVHDWDSLAQVHRPQYQNQGI 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6570g00002 349 SMART E2F_TDP_2 12 77 IPR003316 GO:0005667|GO:0006355
Vium6570g00002 349 SMART E2F_TDP_2 147 226 IPR003316 GO:0005667|GO:0006355
Vium6570g00002 349 Gene3D - 7 79 IPR036388 -
Vium6570g00002 349 Gene3D - 141 228 IPR036388 -
Vium6570g00002 349 Pfam E2F/DP family winged-helix DNA-binding domain 13 77 IPR003316 GO:0005667|GO:0006355
Vium6570g00002 349 Pfam E2F/DP family winged-helix DNA-binding domain 149 226 IPR003316 GO:0005667|GO:0006355
Vium6570g00002 349 MobiDBLite consensus disorder prediction 93 144 - -
Vium6570g00002 349 PANTHER TRANSCRIPTION FACTOR E2F 5 345 IPR015633 GO:0000978|GO:0006357
Vium6570g00002 349 FunFam E2F transcription factor-like E2FE 142 228 - -
Vium6570g00002 349 SUPERFAMILY "Winged helix" DNA-binding domain 11 75 IPR036390 -
Vium6570g00002 349 FunFam E2F transcription factor 8 7 79 - -
Vium6570g00002 349 MobiDBLite consensus disorder prediction 121 142 - -
Vium6570g00002 349 SUPERFAMILY "Winged helix" DNA-binding domain 149 227 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6570g00002 Vium-Chr6570 2642 9550 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6570g00002 7 347 E2F-DP Transcription Factor Family AT3G48160 57.307 1.53e-112 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Vium6570g00002 E2F_TDP 1.8e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6570g00002 K09391 - gmx:100818090 549.666