Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium656g00010 ATGATCCTTTTTGTTGATCGGTTAGAATGCACCAAACTTTTTGGTGGTGAAATTAAGCAGAAACTTGCTTTGGCTAAACAGTTGAATCTCCTTCATCGTCAAGTGGAGGTGTGGTTTCAGAACAGAAGGGCAAGGACAAAGTTGAAGCAAACAGAAGTGGATTGTGAGTATTTGAAGAGATGCTGTGAGACTCTAACAGAAGAGAATAGAAGGTTACAGAAGGAGCTTCAAGAACTTAGAGCCTTGAAAACTTCTCAACCTTTCTACATGCAGCTTCCAGCCACCACTCTCACCATGTGTCCCTCTTGTGAAAGGGTTGCCACAAATTCCACAACAACGAACCAAACTTCTTCCACTATCAACAATAATGCTTCTCAAATCCCTGTCGAGTTATCTCTCAGCAAGCCCAGAATATTGCCCTTCCATAATAGCCAGGCCCAAGCAACCCAGCCACAAGCCCAAGCTCAAGCCCACCAGATAGCCTCTTCATGA 492 0.4411 MILFVDRLECTKLFGGEIKQKLALAKQLNLLHRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVATNSTTTNQTSSTINNNASQIPVELSLSKPRILPFHNSQAQATQPQAQAQAHQIASS 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium656g00010 163 Gene3D - 16 55 - -
Vium656g00010 163 Coils Coil 55 85 - -
Vium656g00010 163 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 19 124 - -
Vium656g00010 163 Pfam Homeobox associated leucine zipper 49 83 IPR003106 GO:0006355|GO:0043565
Vium656g00010 163 SUPERFAMILY Homeodomain-like 19 58 IPR009057 -
Vium656g00010 163 SMART halz 49 92 IPR003106 GO:0006355|GO:0043565
Vium656g00010 163 ProSiteProfiles 'Homeobox' domain profile. 19 49 IPR001356 GO:0003677
Vium656g00010 163 ProSitePatterns 'Homeobox' domain signature. 24 47 IPR017970 GO:0000981|GO:0006355
Vium656g00010 163 CDD homeodomain 19 50 IPR001356 GO:0003677
Vium656g00010 163 Pfam Homeodomain 19 47 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium656g00010 Vium-Chr656 115917 117069 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium656g00010 19 146 Homeobox Transcription Factor Family AT4G37790 63.566 1.56e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vium656g00010 HALZ 5.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium656g00010 K09338 - vum:124819512 265.003