Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium656g00006 ATGTCGTGTTGTGGAGGTGCTGAAGAGGAATTTGGCATTCCACCTACAAACCAATACAATGCATCAGTCGAAAAGGGTAGTGTATATGGTGGTGGAGGAGGAGATAGAGGAGAGCCAAGGGGCAATATAGTCAAAACTGGTGCTCCAAAAAAAGAATTACCAATTGAGATACCTGCCATTTCATTGGATAAGTTAAATCAGTTAACAGACAATTTTGGTACAAAGGCTTTGATAGGAGAAGGTTCTTATGGAAGGGTTTACTTTGCAAAGATGGATGGTGATAAGGAAGTTGCAATCAAGAAGCTAGATACTACTTCTTCTCCAGAACCTGACTCTGATTTTGCAACACAACTATCAGTTGTTTCAAGATTGAAAAGTGACCATTTTGTGGAATTGTTGGGATATTGTTTAGAGGAAAATAACAGAATTTTGGTTTATCAATATGCGAGTTTGGGTTCTTTGCACGACATATTACATGGAAGAAAAGGAGTACAAGGTGCTGAACCCGGTCCGGTTTTAAATTGGAGCCAAAGAGTAAAAATTGCATTTGGTGCAGCAAAAGGACTTGAGTTTCTTCATGAAAAATGTCAACCTTCTATAGTTCACCGCGATGTTAGATCTAGCAATGTCTTACTCTTTGATGACTATGAATCCAAGATTGCAGATTTCAATTTGACAAACCAATCTTCTGACACTGCAGCTCGATTACACTCAACAAGAGTTTTGGGAACATTTGGTTATCATGCTCCAGAGTATGCAATGACAGGACAGATAACCCAAAAAAGTGATGTTTATAGTTTTGGAGTTGTTCTTTTGGAACTTTTAACCGGAAGAAAGCCAGTTGACCATACAATGCCTAAAGGGCAACAAAGTCTTGTAACTTGGGCAACTCCAAGATTGAGTGAGGACAAAGTGAAACAATGTGTGGATCCTAAATTAAATAATGAATACCCTCCTAAGGCAATTGCTAAGCTAGCAGCGGTTGCAGCACTTTGTGTGCAATATGAAGCCGATTTCAGGCCAAACATGACAATTGTTGTCAAAGCTCTCCAACCACTTCTCAATTCTAAACCTACTGGCCCTGATCCTAACTCTAACTCTAACTCTAACGCTTAA 1116 0.3934 MSCCGGAEEEFGIPPTNQYNASVEKGSVYGGGGGDRGEPRGNIVKTGAPKKELPIEIPAISLDKLNQLTDNFGTKALIGEGSYGRVYFAKMDGDKEVAIKKLDTTSSPEPDSDFATQLSVVSRLKSDHFVELLGYCLEENNRILVYQYASLGSLHDILHGRKGVQGAEPGPVLNWSQRVKIAFGAAKGLEFLHEKCQPSIVHRDVRSSNVLLFDDYESKIADFNLTNQSSDTAARLHSTRVLGTFGYHAPEYAMTGQITQKSDVYSFGVVLLELLTGRKPVDHTMPKGQQSLVTWATPRLSEDKVKQCVDPKLNNEYPPKAIAKLAAVAALCVQYEADFRPNMTIVVKALQPLLNSKPTGPDPNSNSNSNA 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium656g00006 371 FunFam PTI1-like tyrosine-protein kinase 3 150 359 - -
Vium656g00006 371 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 27 359 - -
Vium656g00006 371 FunFam Pti1 kinase-like protein 48 148 - -
Vium656g00006 371 SUPERFAMILY Protein kinase-like (PK-like) 53 350 IPR011009 -
Vium656g00006 371 Gene3D Transferase(Phosphotransferase) domain 1 150 366 - -
Vium656g00006 371 SMART tyrkin_6 72 350 IPR020635 GO:0004713|GO:0006468
Vium656g00006 371 ProSitePatterns Protein kinases ATP-binding region signature. 78 101 IPR017441 GO:0005524
Vium656g00006 371 Gene3D Phosphorylase Kinase; domain 1 45 148 - -
Vium656g00006 371 ProSitePatterns Tyrosine protein kinases specific active-site signature. 200 212 IPR008266 GO:0004672|GO:0006468
Vium656g00006 371 ProSiteProfiles Protein kinase domain profile. 72 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium656g00006 371 Pfam Protein tyrosine and serine/threonine kinase 76 350 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium656g00006 Vium-Chr656 49906 53581 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium656g00006 60 369 Receptor kinase-like Gene Family AT3G58690 43.087 8.50e-85 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Vium656g00006 PK_Tyr_Ser-Thr 8.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium656g00006 - - pvu:PHAVU_007G261200g 677.167