Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6562g00002 ATGATATCTTACAATATCAATTTTAATTATTGGCATTTTGCTTTAGCTGTTATTGTTGTTGTCTTCATTCCAAACTTTGGTGTTGCAAAACAATCTAAAATAGATGGATTGAAAATGAATGTGATTGATCGATGTTGGAGATTGAATCATGTATGGAGGATGAATCGACCTCAACTAGCAACATGTTCTATTGGCTACACAGGTAAAATGACAAGCAACATTGGTAAAGACCTCGTTCGTTATAAAGTTATTGACCCTAGTGATGATCCTATAAACCCTAAACCTGGTACCTTGAGATATGGAGCTTCTGTAATTCAACGTAAAGTTTGGATCACATTCCAAAGAGACATGCATATTAGACTCGAAAGACCCCTTCTTATTAGTAGTTTTACAACCATTGATGGTCGAGGCGTTAATGTTGACATTGCTGAAAATGCATGTTTAATGATCTTTAAGGCCACAAATGTAATCATCCATAACATTCGACTTCATCATTGCAAACCTCAAGCTCCAGGGGTTGTGATGGGACCTGAAGGAAAGGTGATTTCTTTGGGCCATGTAGATGGAGATGCAATAAGATTGATTACTGCTTCAAATATTTGGATTGATCACAATACACTTTACAATTGTCAAGATGGCTTACTTGATGTAACACGGGGTTCAACTAATGTGACTATATCTAATAATTGGTTTAGAAATCAAGACAAAGTTATGCTTCTTGGACATGATGATGGTTATATAAGAGACCAAAACATGAAGGTGACCATTATATACAACCACTTCGGACCTAATTGCAATCAACGCATGCCCAGGATTCGTCATGGGTATGCACATGTAGTCAACAATCTTTACTTAGGATGGGTGCAATATGCCATTGGTGGAAGTATGAGACCTAGTCTCAAAAGTGAAGCTAATCTCTTTATAGCACCAACAGAAGGGAGTAAGGAGGTAACATGGAGAAAGAATAGCCACACAAATGGAGATGCATGGGAGTTTTATTCAGTGAAAGATGCATTTGAGAATGGAGCTTCTTTCACAATGACAAAAGGAGGACAAGTGCTAAAACCAAACTATAGTGAAGAACAACGTTTTAATATTGCTAATGTCAAGTATGTGAGATTATTAACTCGTTCATCAGGTGTCTTACGATGCACTAAAACATTTCTATGTTGA 1173 0.3683 MISYNINFNYWHFALAVIVVVFIPNFGVAKQSKIDGLKMNVIDRCWRLNHVWRMNRPQLATCSIGYTGKMTSNIGKDLVRYKVIDPSDDPINPKPGTLRYGASVIQRKVWITFQRDMHIRLERPLLISSFTTIDGRGVNVDIAENACLMIFKATNVIIHNIRLHHCKPQAPGVVMGPEGKVISLGHVDGDAIRLITASNIWIDHNTLYNCQDGLLDVTRGSTNVTISNNWFRNQDKVMLLGHDDGYIRDQNMKVTIIYNHFGPNCNQRMPRIRHGYAHVVNNLYLGWVQYAIGGSMRPSLKSEANLFIAPTEGSKEVTWRKNSHTNGDAWEFYSVKDAFENGASFTMTKGGQVLKPNYSEEQRFNIANVKYVRLLTRSSGVLRCTKTFLC 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6562g00002 390 PANTHER PECTATE LYASE 18-RELATED 37 386 IPR045032 GO:0030570
Vium6562g00002 390 Pfam Pectate lyase 127 307 IPR002022 -
Vium6562g00002 390 PRINTS Pollen allergen Amb family signature 87 112 IPR018082 -
Vium6562g00002 390 PRINTS Pollen allergen Amb family signature 124 140 IPR018082 -
Vium6562g00002 390 PRINTS Pollen allergen Amb family signature 268 287 IPR018082 -
Vium6562g00002 390 PRINTS Pollen allergen Amb family signature 330 354 IPR018082 -
Vium6562g00002 390 PRINTS Pollen allergen Amb family signature 188 209 IPR018082 -
Vium6562g00002 390 PRINTS Pollen allergen Amb family signature 361 384 IPR018082 -
Vium6562g00002 390 PRINTS Pollen allergen Amb family signature 290 309 IPR018082 -
Vium6562g00002 390 SMART amb_all 116 313 IPR002022 -
Vium6562g00002 390 SUPERFAMILY Pectin lyase-like 39 349 IPR011050 -
Vium6562g00002 390 Gene3D - 39 383 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6562g00002 Vium-Chr6562 25207 26698 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6562g00002 70 317 Polysaccharide Lyase AT5G09280 68.952 1.96e-139 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6562g00002 K01728 - gmx:100780437 681.019