Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6562g00001 ATGCATCTCTTTCCCTTCACTACCATAATCATCTTCACCGTTTTGATTCACAACTTCTCTCTGATTCTGGGGCAGCAACCTTATATTGGTTTAGGAACAGTAGCATGCCCTCGAAGAGGTAACAGAAACTCTATTCGTGGATACACTTGTAATGGTGCAAACAGCTGCCAAGCATTCCTTACCTTCAGATCTCAACCCATTTACGACTCTGTCTCCACAATATCTACTTTATTGGGTTCTGACCCCTCCCAACTTGCTAAAATAAATTCCGTTTCCCTGAATGACACCTTCGAAACAAACAAGTTGGTGCTTGTTCCGGTCAACTGTTCCTGTGCAGGTGAGTATTATCAAACAAACACATCCTATGTGTTCCAGAATGCAGAAACTTACTTCTTGGTTGCTAACAACACTTTCGAGGGCCTCACAACATGTCAAGCTTTGCAGAATCAAAACCACAACCCAGCAAACATATACCCCGGCAGAAAACTTCTAGTGCCTCTCAGATGTGCTTGCCCCACAAAAAACCAAACCCAGAAAGGCATCAGGTACCTCTTAAGCTACTTGGTGAATTGGGGTGATTCTGTTTCCCTCATTGCTGACAAATTTGGTGTTGGCTCTGTGACCGCTCTTGAGGCTAATAACCTCACTTTGACACAATCCATGATCTATCCCTTTACTACACTTCTAATTCCCCTTCATGATAAGCCCTCAAGTTCTCAAACCGTTTCTCCAGCTCAACTTACGCCACCACCTTCATCACCCCCCTCTTCTCATCAAAAGAAAACATGGGTGTATGTTGTTGTTGGAGTTGTTGCAGGAGCTGTTGCCTTAACATCAGCTCTCTGTGCTGTCATTTTCTTCACACGCAGGAGAAAAAATAGAAACGAAGACGAGTCGGTGGTAGTGTCAAAGGCAACTAAGAAAAAACCACCAATGAGTGTAAATGAAAAATTGTCAGAGATCATATCTGGCATAGCTCAATCGTTCAAGGTTTATGATTTTGAGGACCTAATGCGAGCAACAGATAACTTTAGTCCTAGCTACTGGATCAAAGGGTCTGTTTATCGCGGAGTGATTAATGGTGATTTGGCTGCAATTAAAAAGATAGAAGGTGATGTGACAAAGGAGTTGGAGATACTGAGCAAAATCAACCATTCTAATGTTGTACGCCTTTCCGGTGTTAGCTTCCACGAGGGACGATGGTACTTTGTTTATGAGTATGCTGCTAATGGAGATTTGAGTGAATGGATCTACTTCAACAACGCAGATGGGAAGTTTCTGAGTTGGACGCAGAGAATACAGATTGCATTGGATGTGGCCACAGGACTTGATTATCTTCACAGTTTCAGTTCTCCTTATATCCACAAGGATATTAAGAGTACTAACATTCTTCTGAATGGTGACTTCAGAGGAAAGGTCGCAAATTTAAGCCTTGTGAGGCGTGTGGAAGGAGGGGACGACCAGTTTCCTGCCACTAGGCACATTGTTGGGACAAGAGGCTACATGGCTCCCGAGTATTTGGAACATGGTCTTGTGTCTACAAAGCTTGTTGTGTATGCTTTTGGGGTAGTGATGCTGGAAATGATCACAGGAAAAGAGGCTGCTGCTATTGTAACAGAAGACGAGACAAATTTGTCACATGTTTTGCGCGTCATGCTTGGTGAGGAGAGGTTGAAGGAGTTTGTGGATCCCTCTTTGCGAGAAAATTTTCCATTTGAACTTGGTATGTTTGTGGTTGAGTTGATTGATAATTGCATATCGAATGATCCAGCAAGTCGTCCTAGTGTGCCTGAGATTGTGCAATCTCTGTCAAGAACCCTGAATTCTTCATTGAGTTGGGAAAGGTCAATGAATGTCCCACGAAGCTAA 1869 0.4318 MHLFPFTTIIIFTVLIHNFSLILGQQPYIGLGTVACPRRGNRNSIRGYTCNGANSCQAFLTFRSQPIYDSVSTISTLLGSDPSQLAKINSVSLNDTFETNKLVLVPVNCSCAGEYYQTNTSYVFQNAETYFLVANNTFEGLTTCQALQNQNHNPANIYPGRKLLVPLRCACPTKNQTQKGIRYLLSYLVNWGDSVSLIADKFGVGSVTALEANNLTLTQSMIYPFTTLLIPLHDKPSSSQTVSPAQLTPPPSSPPSSHQKKTWVYVVVGVVAGAVALTSALCAVIFFTRRRKNRNEDESVVVSKATKKKPPMSVNEKLSEIISGIAQSFKVYDFEDLMRATDNFSPSYWIKGSVYRGVINGDLAAIKKIEGDVTKELEILSKINHSNVVRLSGVSFHEGRWYFVYEYAANGDLSEWIYFNNADGKFLSWTQRIQIALDVATGLDYLHSFSSPYIHKDIKSTNILLNGDFRGKVANLSLVRRVEGGDDQFPATRHIVGTRGYMAPEYLEHGLVSTKLVVYAFGVVMLEMITGKEAAAIVTEDETNLSHVLRVMLGEERLKEFVDPSLRENFPFELGMFVVELIDNCISNDPASRPSVPEIVQSLSRTLNSSLSWERSMNVPRS 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6562g00001 622 ProSiteProfiles LysM domain profile. 185 230 IPR018392 -
Vium6562g00001 622 SMART serkin_6 349 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6562g00001 622 Gene3D LysM domain 185 243 IPR036779 -
Vium6562g00001 622 ProSitePatterns Serine/Threonine protein kinases active-site signature. 453 465 IPR008271 GO:0004672|GO:0006468
Vium6562g00001 622 Pfam LysM domain 187 231 IPR018392 -
Vium6562g00001 622 Gene3D Transferase(Phosphotransferase) domain 1 408 616 - -
Vium6562g00001 622 ProSiteProfiles Protein kinase domain profile. 288 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6562g00001 622 SMART LysM_2 121 166 IPR018392 -
Vium6562g00001 622 SMART LysM_2 186 231 IPR018392 -
Vium6562g00001 622 FunFam PTI1-like tyrosine-protein kinase 3 408 617 - -
Vium6562g00001 622 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 9 615 - -
Vium6562g00001 622 Gene3D Phosphorylase Kinase; domain 1 303 407 - -
Vium6562g00001 622 MobiDBLite consensus disorder prediction 237 259 - -
Vium6562g00001 622 SUPERFAMILY Protein kinase-like (PK-like) 327 603 IPR011009 -
Vium6562g00001 622 Pfam Protein kinase domain 354 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6562g00001 Vium-Chr6562 13968 16116 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6562g00001 3 616 Receptor kinase-like Gene Family AT2G23770 41.653 5.58e-169 493
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vium6562g00001 Pkinase 1.7e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6562g00001 - - gmx:100779907 1019.61