Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6552g00003 ATGGCCGCAGAAATATGTGGCGCGTCTCTATTCTTATCCGCTAAAACTCAGCTGCAAGTGCAACTGCAACTGCAACTGCAACAACGACACCACCAGCGACTCGCGTTCATCCATGCTCAACGAAGCAGAACAAGAAAAATCACTACCAGGTTCCACTCATCCAAACGCTGCTTTAGTTCCGGCTTTCCAAATGCTTCCACGTTTCGCCGCAGTGTTGTGTGCCAGGTCGCCAGCACCGACTTCGAATCCGCCGCCAAAGCCGGCGAGCATCGGCTCTCTAAGGTGCCGGTGCGTAATATAAGAAACTTCTGCATCATTGCGCATATTGACCACGGGAAATCGACGTTGGCGGATAAGTTGCTTCAGGTTACTGGCACGGTGCACAAGCGAGAAATGAAGGACCAGTTTCTTGATAACATGGACTTGGAGAGAGAAAGAGGCATCACTATTAAGCTCCAGGCAGCTCGAATGCGTTATGTGTTTGAAAATGAACCTTATTGCTTGAATCTAATCGATACACCAGGTCATGTCGACTTCTCGTATGAGGTTTCACGGTCACTTGCTGCATGTGAGGGTGCTCTTCTAGTAGTAGATGCTTCTCAGGGTGTTGAAGCACAAACCCTAGCTAATGTTTATTTGGCTTTGGAGAACAACCTAGAAATTATCCCTGTTTTGAACAAAATAGATCTTCCGGGTGCAGAACCAGATCGAGTTATCAAGGAGATTGAAGAGATTGTAGGTCTAGATTGTAGCAATGCGATTCTCTGCTCTGCAAAGGAAGGAATTGGTATAATTGATATTCTCAATGCAATTGTTGCAAGAATGCCCCCACCTGAAGATACATCTAAAAGACCATTGAGGGCTTTAATATTTGACAGCTACTATGATCCATATAGAGGTGTTATTGTATACTTTCGAGTTGTAGATGGGTCTATAAAGAAAGGTGACAGAGTTTATTTCATGGCTAGTGGGAAGGATTACTTTGCTGATGAAATTGGAGTTTTGTCTCCCAATCAACTTCAAGTTGAAGAACTGTATGCTGGTGAGGTGGGCTATCTATCTGCATCAATAAGAACAGTAGCTGATGCGAGAGTGGGTGACACTATTACTCACTATGGAAGAAAGGCTGATAATTCACTTCCTGGATACGAGGAAGCCACTCCTATGGTGTTCTGTGGCTTGTTTCCTGTTGATGCTGACCAATTCCCTGATCTGCGTGATGCACTTGAAAAGCTACAACTCAATGATGCTGCACTAAAGTTTGAACCTGAGACCTCGAGTGCCATGGGGTTTGGCTTTAGATGTGGGTTTCTGGGTCTTCTTCATATGGAAATTGTCCAGGAGAGACTTGAGAGAGAATACAATTTGAGCTTGATAACAACTGCTCCAAGTGTTGTGTACAGAGTAAACTGTGTAAATGGTGATACTGTTGAGTGCTCAAACCCATCTTTACTTCCTGAGCCTGGACAAAGGAAATCAATTGAGGAGCCATTTGTTAAGATTGAGATGCTTACACCAAAAGACTACATTGGTTCACTTATGGAGCTGGCACAAGAAAGAAGAGGGCAGTTTAAAGAATTGAAATTTATTGCTGAAAATAGGGCATCAATTGTCTATGAATTACCATTAGCAGAGATGGTTGGTGATTTCTTTGATCAGTTGAAGTCAAGAAGTAAGGGTTATGCTAGTATGGAGTATACGTTTGTTGGGTACATCGAAAGTAATTTAATTAAACTTGACATAAGGATAAATGGTGACTGTGTGGAGCCATTGGCCACAATTGTGCACAACGATAAGGCGTATTCTGTGGGAAGGGCTTTGACTTTGAAGTTGAAGGAGCTCATACCACGACAAATGTTTAAAGTACCAATTCAAGCATGTATAGGATCAAAAGTGATTGCCAGCGAAGCGATATCTGCAATACGGAAGGATGTACTAGCCAAATGCTACGGTGGTGATATTACAAGAAAAAAGAAATTGCTTAAGAAACAGGCTGAAGGAAAGAAAAGGATGAAGTCTATTGGTAAAGTTGATGTTCCCCAAGAAGCTTTCATGGCAGTTTTGAAACTTGAAAAGGAGGTAATATGA 2088 0.4267 MAAEICGASLFLSAKTQLQVQLQLQLQQRHHQRLAFIHAQRSRTRKITTRFHSSKRCFSSGFPNASTFRRSVVCQVASTDFESAAKAGEHRLSKVPVRNIRNFCIIAHIDHGKSTLADKLLQVTGTVHKREMKDQFLDNMDLERERGITIKLQAARMRYVFENEPYCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPDRVIKEIEEIVGLDCSNAILCSAKEGIGIIDILNAIVARMPPPEDTSKRPLRALIFDSYYDPYRGVIVYFRVVDGSIKKGDRVYFMASGKDYFADEIGVLSPNQLQVEELYAGEVGYLSASIRTVADARVGDTITHYGRKADNSLPGYEEATPMVFCGLFPVDADQFPDLRDALEKLQLNDAALKFEPETSSAMGFGFRCGFLGLLHMEIVQERLEREYNLSLITTAPSVVYRVNCVNGDTVECSNPSLLPEPGQRKSIEEPFVKIEMLTPKDYIGSLMELAQERRGQFKELKFIAENRASIVYELPLAEMVGDFFDQLKSRSKGYASMEYTFVGYIESNLIKLDIRINGDCVEPLATIVHNDKAYSVGRALTLKLKELIPRQMFKVPIQACIGSKVIASEAISAIRKDVLAKCYGGDITRKKKLLKKQAEGKKRMKSIGKVDVPQEAFMAVLKLEKEVI 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6552g00003 695 FunFam Translation factor GUF1, mitochondrial 381 462 - -
Vium6552g00003 695 Gene3D Translation factors 281 380 - -
Vium6552g00003 695 CDD EF4_II 286 371 - -
Vium6552g00003 695 NCBIfam translation elongation factor 4 99 690 IPR006297 GO:0005525
Vium6552g00003 695 CDD LepA 101 278 - -
Vium6552g00003 695 Hamap Translation factor GUF1 homolog, organellar chromatophore [lepA]. 92 692 IPR027518 -
Vium6552g00003 695 FunFam Translation factor GUF1, mitochondrial 463 573 - -
Vium6552g00003 695 Pfam GTP-binding protein LepA C-terminus 583 689 IPR013842 -
Vium6552g00003 695 SMART EFG_C_a 493 581 IPR000640 -
Vium6552g00003 695 Gene3D - 463 573 - -
Vium6552g00003 695 CDD lepA_C 496 575 IPR035654 -
Vium6552g00003 695 Gene3D - 575 649 IPR038363 -
Vium6552g00003 695 FunFam Translation factor GUF1, mitochondrial 575 649 - -
Vium6552g00003 695 NCBIfam small GTP-binding protein domain 101 270 IPR005225 GO:0005525
Vium6552g00003 695 Gene3D Elongation Factor G (Translational Gtpase), domain 3 381 462 - -
Vium6552g00003 695 Pfam Elongation factor G C-terminus 494 578 IPR000640 -
Vium6552g00003 695 FunFam Elongation factor 4 97 280 - -
Vium6552g00003 695 SUPERFAMILY EF-G C-terminal domain-like 387 465 IPR035647 -
Vium6552g00003 695 FunFam Translation factor GUF1, mitochondrial 281 379 - -
Vium6552g00003 695 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 138 153 IPR031157 -
Vium6552g00003 695 SUPERFAMILY EF-G C-terminal domain-like 494 588 IPR035647 -
Vium6552g00003 695 PRINTS GTP-binding elongation factor signature 102 115 IPR000795 GO:0003924|GO:0005525
Vium6552g00003 695 PRINTS GTP-binding elongation factor signature 145 153 IPR000795 GO:0003924|GO:0005525
Vium6552g00003 695 PRINTS GTP-binding elongation factor signature 169 179 IPR000795 GO:0003924|GO:0005525
Vium6552g00003 695 PRINTS GTP-binding elongation factor signature 185 196 IPR000795 GO:0003924|GO:0005525
Vium6552g00003 695 PRINTS GTP-binding elongation factor signature 221 230 IPR000795 GO:0003924|GO:0005525
Vium6552g00003 695 CDD EF4_III 388 463 - -
Vium6552g00003 695 Gene3D - 97 280 IPR027417 -
Vium6552g00003 695 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 95 296 IPR027417 -
Vium6552g00003 695 Pfam Elongation factor Tu domain 2 300 370 IPR004161 GO:0005525
Vium6552g00003 695 SUPERFAMILY Translation proteins 260 382 IPR009000 -
Vium6552g00003 695 PANTHER TRANSLATION FACTOR GUF1-RELATED 75 690 IPR006297 GO:0005525
Vium6552g00003 695 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 98 279 IPR000795 GO:0003924|GO:0005525
Vium6552g00003 695 Hamap Elongation factor 4 [lepA]. 95 693 IPR006297 GO:0005525
Vium6552g00003 695 Pfam Elongation factor Tu GTP binding domain 99 276 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6552g00003 Vium-Chr6552 13811 27049 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6552g00003 98 333 Eukaryotic Initiation Factors Gene Family AT3G22980 34.137 4.35e-27 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6552g00003 K21594 - gmx:100784073 1264.21