Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium654g00001 ATGAACTCCAACACTTCGAATTCTCAGTCAATGGCGGTGGCGGCGAGTGATGTGTCGGGGAAGAAGGTGAGGAAGCCTTACACCATAACCAAGTCAAGGGAGAGTTGGACCGAGGAAGAGCACGACAAGTTTCTTGAAGCTCTTCAACTATTTGACAGGGATTGGAAAAAAATTGAAGATTTTGTAGGTTCAAAAACAGTTATTCAGATTCGAAGCCATGCTCAGAAATACTTCTTGAAAGTTCAAAAGAATGGGACTGTGGCTCATGTGCCTCCTCCCCGTCCTAAGCGAAAAGCTGCTCATCCTTACCCACAAAAAGCATCAAAAAATGTTTTGGTACCACTACCAGCTTCCATTGGTTATACTTCAACAAACATGCTTGCACCTGGCTTTGCCAAATGGGATGAAACCTCCTTGCTGATGAATACAGGAGTCAGTAAATCCATGACCTGTCAGGATGAACTCAACAGTATTCGTGGAAATGAAGCTGATATTGGATCAAAGGGGATAACAAAGATTACCAACAGCATTCTTAGTGGTGTCAGAAATTCTACTAGAACACTACAGACTTCTGAGATACCAAAGCAAGGGAAACAAGCTCCGGTTATTCATGGTTTGCCAGATTTTGCTGAAGTTTACAGTTTCATTGGAAGTGTATTTGATCCAGATACAAATGACCATGTCCAAAAGCTGAAGGAAATGGATCCTATAAATTTTGAAACTGTTTTATTGTTAATGAGAAACCTCACTGTCAACTTGTCTAGCCCTGACTTTGAACCCATCAAGAAGGCATTGTCAGCATATGATGTGAATGGCATGGCAGTAGGAGTTGGTACAGGAATTGATGTGAAGAAGCAGACAAATGATCTATCATGTCAAACTGCTTAA 888 0.4144 MNSNTSNSQSMAVAASDVSGKKVRKPYTITKSRESWTEEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTVAHVPPPRPKRKAAHPYPQKASKNVLVPLPASIGYTSTNMLAPGFAKWDETSLLMNTGVSKSMTCQDELNSIRGNEADIGSKGITKITNSILSGVRNSTRTLQTSEIPKQGKQAPVIHGLPDFAEVYSFIGSVFDPDTNDHVQKLKEMDPINFETVLLLMRNLTVNLSSPDFEPIKKALSAYDVNGMAVGVGTGIDVKKQTNDLSCQTA 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium654g00001 295 PANTHER SWI/SNF COMPLEX-RELATED 5 254 - -
Vium654g00001 295 MobiDBLite consensus disorder prediction 1 15 - -
Vium654g00001 295 NCBIfam myb-like DNA-binding domain, SHAQKYF class 31 80 IPR006447 GO:0003677
Vium654g00001 295 ProSiteProfiles Myb-like domain profile. 28 78 IPR001005 -
Vium654g00001 295 SMART sant 32 80 IPR001005 -
Vium654g00001 295 SUPERFAMILY Homeodomain-like 27 83 IPR009057 -
Vium654g00001 295 Gene3D - 36 83 - -
Vium654g00001 295 ProSiteProfiles SANT domain profile. 31 84 IPR017884 -
Vium654g00001 295 MobiDBLite consensus disorder prediction 1 24 - -
Vium654g00001 295 CDD SANT 35 78 IPR001005 -
Vium654g00001 295 FunFam protein REVEILLE 6 isoform X1 35 83 - -
Vium654g00001 295 Pfam Myb-like DNA-binding domain 33 78 IPR001005 -
Vium654g00001 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 28 82 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium654g00001 Vium-Chr654 57135 62662 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vium654g00001 Myb_DNA-binding 4.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium654g00001 - - vra:106754423 560.451