Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6546g00004 ATGAAGAAAACCCTAGTTTACTATCGAGGAAGAGCACCCCATGGCTCTCGCACAAATTGGGTTATGCATGAATATCGTCTTGATGAGACAGAATGCGAAACTGCTTCAGGCTTGCAGGATGCATATGCTCTTTGCCGTGTGTTGAAGAAGACTGCAGTGATTCCTCAAAAAGTTGAGGGGCAGTATGCTAATGTTCCCAATGTCAATCAGATTACAAGCGATCAATCATCGAGCATTGAACTATACTCTGAAGGAAGGGGCGAAGATTTAGTAGATAGCTCAAATTATTTTATGTCTGTGGATACTTGTTCACCACACAATGTTGGAACTGAGACTCCTCTCCCCATAAGTGGTGGAACGACAATGGATCATGTAAAATGGTCACACTTTTCATCACAAGATTCAATATTTAGTCTTCCAACTTCTTCATATCCTAATTTTGGAGCCATAGCATACCCTCCATCCAAGGTGGATATAGCACTAGAGTGTGCAAGGATGCAACATAGGTTTGTTATGCCCCCTTTGGAGGTGGATGACTTCCCTCAAGTTGGAATCTCTGAGCTGAAAATGACACAAGCTTCTAGTTACATGCAAGGAAGCAGAACTGAAACAGATATCTTACAGGAAATTCTTTCAGTGGCTCAGGCCTCTCAGGAATTAATAAATCAATCCAACAACTCACAGGATTGGTGTGGCAATGATTATTATGCTCCTCGTGATGACGATTTTGCCTTCATGGTTGGCACTGACTACAATCATTCAAATGAAATAATGAGCTCAGTGAGGTATGTTGACAAAGCATGGGAAGATGCAAATACAAGGACAATAGAGATCGGAGATATGGATGAAGAATTTAAGTTGGAGAGGAATGTAGAGAATTTAAGATGGGTCGGAATGTCAAAAGAAGATTTAGAAAAGATGGAAGAACAAAATATTGTCCCAATAGAGGATATTTCAAGCTTCCAAACTAAGATGAAAGAAAATGAGGTGCAAGAATCTGAGCAACACAGTAACATGGAACATAATGGTACTGAAATAAATGATTTCTCATTGGGTTTCATGAATGATGACGATCCTACAGAGAACTTGACAGAAGATGGTAACAAGGATGATTATTCAAGTTCTCCTAGTTTTGAGGTTGTTGAGGAAATAAAGGTTAATCGTGGAATGTTTGTTTCGACTCGTCAAGTGGCGGAGACATTCTTTCAGCAAATGGTTCCTTCACAAACAGTCCAAGTTCAGCTTAATACAGTGATGGCACACAATCATTACGTAGAGAATGCAGAGGCAATGGTGTTGATAATGGAGGACAAAGGATCTTTAAGGAAGGTTAAGGCCTATGTGATGGGGAAGCTAATAAAGCCATCAATGACAATAGCAAGTGCGATTGTATTCGTCTTTGCACTTGTGCTGATGCACTATGCTTTTATAAAGGGAGAAGTGAAATTTTGGAATGAGACATGTTGCAGTAATAGTGATAACATCATGAAGAAAACGAATCAATCATGTCAGATAATGAATGAGTCAAATGATGTTTGGTTTATTGGTATCAAAAGTGGAAAAGGTTTAAGTGCAGTCTTGAAGAAAATAGGCATTTTTCTGACTATATTCTTTGCTCTTTGTGCCATGTGGGCTAACCATAGTTGA 1647 0.3928 MKKTLVYYRGRAPHGSRTNWVMHEYRLDETECETASGLQDAYALCRVLKKTAVIPQKVEGQYANVPNVNQITSDQSSSIELYSEGRGEDLVDSSNYFMSVDTCSPHNVGTETPLPISGGTTMDHVKWSHFSSQDSIFSLPTSSYPNFGAIAYPPSKVDIALECARMQHRFVMPPLEVDDFPQVGISELKMTQASSYMQGSRTETDILQEILSVAQASQELINQSNNSQDWCGNDYYAPRDDDFAFMVGTDYNHSNEIMSSVRYVDKAWEDANTRTIEIGDMDEEFKLERNVENLRWVGMSKEDLEKMEEQNIVPIEDISSFQTKMKENEVQESEQHSNMEHNGTEINDFSLGFMNDDDPTENLTEDGNKDDYSSSPSFEVVEEIKVNRGMFVSTRQVAETFFQQMVPSQTVQVQLNTVMAHNHYVENAEAMVLIMEDKGSLRKVKAYVMGKLIKPSMTIASAIVFVFALVLMHYAFIKGEVKFWNETCCSNSDNIMKKTNQSCQIMNESNDVWFIGIKSGKGLSAVLKKIGIFLTIFFALCAMWANHS 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6546g00004 548 ProSiteProfiles NAC domain profile. 1 50 IPR003441 GO:0003677|GO:0006355
Vium6546g00004 548 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 191 - -
Vium6546g00004 548 MobiDBLite consensus disorder prediction 331 375 - -
Vium6546g00004 548 SUPERFAMILY NAC domain 1 50 IPR036093 GO:0003677|GO:0006355
Vium6546g00004 548 Gene3D NAC domain 1 53 IPR036093 GO:0003677|GO:0006355
Vium6546g00004 548 Pfam No apical meristem (NAM) protein 1 27 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6546g00004 Vium-Chr6546 15828 18849 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6546g00004 2 472 NAC Transcription Factor Family AT1G65910 39.220 1.48e-84 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6546g00004 - - vum:124843561 1110.52