Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6546g00003 ATGGCACCTGTTTTGCCTCCTGGTTTTAGGTTCCACCCTACTGACGAAGAACTCGTTGCTTATTACCTTAAAAGGAAAATCAATGGCCGAAAGATCGAGTTGGAAATCATTCCAGAAGTTGATCTCTACAAGTGTGAACCATGGGACTTACCAGGGAAATCATTGTTACCGGGGAAGGATTTGGAGTGGTATTTCTTTAGCCCTCGTGACAGAAAATACCCAAATGGATCAAGAACAAACCGAGCAACAAAATCTGGGTATTGGAAAGCAACAGGGAAGGATAGAAAGGTAAATTCGAAGGCTCGTTCTGTGGGTATGAAGAAAACCCTAGTTTACTATCGAGGAAGAGCACCCCATGGCTCTCGCACAAATTGGGTTATGCATGAATATCGTCTTGATGAGACAGAATGCGAAACTGCTTCAGGCTTGCAGGATGCATATGCTCTTTGCCGTGTGTTGAAGAAGACTGCAGTGATTCCTCAAAAAGTTGAGGGGCAGTATGCTAATGTTCCCAATGTCAATCAGATTACAAGCGATCAATCATCGAGCATTGAACTATACTCTGAAGGAAGGGGCGAAGATTTAGTAGATAGCTCAAATTATTTTATGTCTGTGGATACTTGTTCACCACACAATGTTGGAACTGAGACTCCTCTCCCCATAAGTGGTGGAACGACAATGGATCATGTAAAATGGTCACACTTTTCATCACAAGATTCAATATTTAGTCTTCCAACTTCTTCATATCCTAATTTTGGAGCCATAGCATACCCTCCATCCAAGGTGGATATAGCACTAGAGTGTGCAAGGATGCAACATAGGTTTGTTATGCCCCCTTTGGAGGTGGATGACTTCCCTCAAGTTGGAATCTCTGAGCTGAAAATGACACAAGCTTCTAGTTACATGCAAGGAAGCAGAACTGAAACAGATATCTTACAGGAAATTCTTTCAGTGGCTCAGGCCTCTCAGGAATTAATAAATCAATCCAACAACTCACAGGATTGGTGTGGCAATGATTATTATGCTCCTCGTGATGACGATTTTGCCTTCATGGTTGGCACTGACTACAATCATTCAAATGAAATAATGAGCTCAGTGAGGTATGTTGACAAAGCATGGGAAGATGCAAATACAAGGACAATAGAGATCGGAGATATGGATGAAGAATTTAAGTTGGAGAGGAATGTAGAGAATTTAAGATGGGTCGGAATGTCAAAAGAAGATTTAGAAAAGATGGAAGAACAAAATATTGTCCCAATAGAGGATATTTCAAGCTTCCAAACTAAGATGAAAGAAAATGAGGTGCAAGAATCTGAGCAACACAGTAACATGGAACATAATGGTACTGAAATAAATGATTTCTCATTGGGTTTCATGAATGATGACGATCCTACAGAGAACTTGACAGAAGATGGTAACAAGGATGATTATTCAAGTTCTCCTAGTTTTGAGGTTGTTGAGGAAATAAAGGTTAATCGTGGAATGTTTGTTTCGACTCGTCAAGTGGCGGAGACATTCTTTCAGCAAATGGTTCCTTCACAAACAGTCCAAGTTCAGCTTAATACAGTGATGGCACACAATCATTACGTAGAGAATGCAGAGGCAATGGTGTTGATAATGGAGGACAAAGGATCTTTAAGGAAGGTTAAGGCCTATGTGATGGGGAAGCTAATAAAGCCATCAATGACAATAGCAAGTGCGATTGTATTCGTCTTTGCACTTGTGCTGATGCACTATGCTTTTATAAAGGGAGAAGTGAAATTTTGGAATGAGACATGTTGCAGTAATAGTGATAACATCATGAAGAAAACGAATCAATCATGTCAGATAATGAATGAGTCAAATGATGTTTGGTTTATTGGTATCAAAAGTGGAAAAGGTTTAAGTGCAGTCTTGAAGAAAATAGGCATTTTTCTGACTATATTCTTTGCTCTTTGTGCCATGTGGGCTAACCATAGTTGA 1962 0.3996 MAPVLPPGFRFHPTDEELVAYYLKRKINGRKIELEIIPEVDLYKCEPWDLPGKSLLPGKDLEWYFFSPRDRKYPNGSRTNRATKSGYWKATGKDRKVNSKARSVGMKKTLVYYRGRAPHGSRTNWVMHEYRLDETECETASGLQDAYALCRVLKKTAVIPQKVEGQYANVPNVNQITSDQSSSIELYSEGRGEDLVDSSNYFMSVDTCSPHNVGTETPLPISGGTTMDHVKWSHFSSQDSIFSLPTSSYPNFGAIAYPPSKVDIALECARMQHRFVMPPLEVDDFPQVGISELKMTQASSYMQGSRTETDILQEILSVAQASQELINQSNNSQDWCGNDYYAPRDDDFAFMVGTDYNHSNEIMSSVRYVDKAWEDANTRTIEIGDMDEEFKLERNVENLRWVGMSKEDLEKMEEQNIVPIEDISSFQTKMKENEVQESEQHSNMEHNGTEINDFSLGFMNDDDPTENLTEDGNKDDYSSSPSFEVVEEIKVNRGMFVSTRQVAETFFQQMVPSQTVQVQLNTVMAHNHYVENAEAMVLIMEDKGSLRKVKAYVMGKLIKPSMTIASAIVFVFALVLMHYAFIKGEVKFWNETCCSNSDNIMKKTNQSCQIMNESNDVWFIGIKSGKGLSAVLKKIGIFLTIFFALCAMWANHS 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6546g00003 653 ProSiteProfiles NAC domain profile. 5 155 IPR003441 GO:0003677|GO:0006355
Vium6546g00003 653 SUPERFAMILY NAC domain 3 155 IPR036093 GO:0003677|GO:0006355
Vium6546g00003 653 MobiDBLite consensus disorder prediction 436 480 - -
Vium6546g00003 653 Gene3D NAC domain 14 158 IPR036093 GO:0003677|GO:0006355
Vium6546g00003 653 FunFam Nac domain-containing protein 86 14 158 - -
Vium6546g00003 653 Pfam No apical meristem (NAM) protein 6 132 IPR003441 GO:0003677|GO:0006355
Vium6546g00003 653 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 4 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6546g00003 Vium-Chr6546 14044 18849 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6546g00003 1 577 NAC Transcription Factor Family AT1G65910 47.878 1.13e-162 479
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium6546g00003 NAM 4.3e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6546g00003 - - vum:124843561 1110.52