Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6534g00001 ATGGAACAGGGTCAATGTTGGACTAAGAGAAAGTACTCTTTGAGCTCTAGTCTTAGTTCACCAACCAACCCTTCCTGTGGTGACTCATGGGAAGAACAGGCTTTTGCAGAAGATGCTGCTAATTCTCTTGGTGGCTGTGTGTGGCCTCCAAGATCATACTCTTGTAGCTTTTGCAGAAGAGAGTTTAGGTCAGCACAGGCTCTAGGTGGCCATATGAATGTTCATAGAAGGGATAGAGCAAGACTAAAGCAGCAACCCTCAAGCCCCCACAATGAAATTCTATGTCATGACCTTCAAACTCAACTCCATATGCCAGTTCAAAGTCCTTTGGATGATTACCTATACCCGTCTCCTGTTTGTGGATTACCTTGTAAAAAAACTAAACCTAATTCTTATCATGATTTTGTTGCTTCACCTTCTTCACCCTCACATTCGAAGGCTTTATTAGCTCCATCAGTTAATAGTGGTAACTCCAGAGATGAAACCGTGATTCCGTTTTATGATTCCAGTGTTCTCCACAAGATTTCTCCTATCAGTAACTCTTCCGAATCCTGGCCATGTTTAGCTGAAGATCATAGATTATATTCATGTAAGTTCCATCCTCAAGCTGATACGAAGAAATCCTCCAAGGGCGATACGGATGATATTGATGGGGATATGATCTTGAATTCAGTTGTGTGTAGCACTCACCCATCTTTGCAGTTTGAGAGTACTAAAGAGGCAGATCATATCAGTTACAAGAAGAAGAAAACAGATGCTTCCTCATCACCATTTTCACCAAAGTCAAGCTCAGTTGACAGACATCATATGGAGACAAAGATGTTTGAATTTAGCCCTAGCTCAGTGGAAGAGCTAGATCTGGAGTTAAGGCTTGGTAACAGGTCCAAGGTATAG 894 0.4195 MEQGQCWTKRKYSLSSSLSSPTNPSCGDSWEEQAFAEDAANSLGGCVWPPRSYSCSFCRREFRSAQALGGHMNVHRRDRARLKQQPSSPHNEILCHDLQTQLHMPVQSPLDDYLYPSPVCGLPCKKTKPNSYHDFVASPSSPSHSKALLAPSVNSGNSRDETVIPFYDSSVLHKISPISNSSESWPCLAEDHRLYSCKFHPQADTKKSSKGDTDDIDGDMILNSVVCSTHPSLQFESTKEADHISYKKKKTDASSSPFSPKSSSVDRHHMETKMFEFSPSSVEELDLELRLGNRSKV 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6534g00001 297 PANTHER OS07G0101800 PROTEIN 26 294 - -
Vium6534g00001 297 SUPERFAMILY beta-beta-alpha zinc fingers 50 79 IPR036236 -
Vium6534g00001 297 ProSitePatterns Zinc finger C2H2 type domain signature. 55 75 IPR013087 -
Vium6534g00001 297 MobiDBLite consensus disorder prediction 238 272 - -
Vium6534g00001 297 Pfam C2H2-type zinc finger 53 77 - -
Vium6534g00001 297 ProSiteProfiles Zinc finger C2H2 type domain profile. 53 80 IPR013087 -
Vium6534g00001 297 SMART c2h2final6 53 75 IPR013087 -
Vium6534g00001 297 Gene3D Classic Zinc Finger 49 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6534g00001 Vium-Chr6534 18143 24443 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6534g00001 29 84 C2H2 Transcription Factor Family AT2G37740 82.143 4.98e-26 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium6534g00001 zf-C2H2_6 1.3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6534g00001 - - gmx:100801427 479.944