Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6533g00021 ATGAATCCTCTTGGAAAGTTTCCTGTGTTGGAAACACCCGATGGTCCAGTCTTCGAAAGCAATGCCATTGCTCGTTACGTTGCTCGGCTCAATGGTGACAACGCATTGTACCTGTCTACTCCCATTGATAATGCCCGCATCGACCAGTGGATTGATTTTTCAACTTTGGAGATTGATTCTAATATTCTCAAATTGTACCTACCAAGGTTTGGATACGCTCCATACCTTCCACCGGCGGTGGAGGCTGCAAATTCTGCGTTGAAGAGAGCATTGGGGGCCTTGAACACTCACCTTGCATCCAATACGTACCTGGTTGGTGATTCCGTCACCCTTGCTGACATCATAACGACATGCAACCTGTATTTGGGTTTCACCGAGATCTTAGTTAAGAGCTTCACTTCGGAGTTCCCTCATGTTGAGAGATACTTTTGGACCTTGGTCAACCAGCCCAATTTCCGCAAGATATTAGGTCAGGTTAAGCAAACCGACGTTGTTCCACCTCTTCAATCTGCGAAGAAGCCTGCCCAGCCTAAGGAGTCGAAACCCAAACCTAAGGATGAGCCGAAGAAAGTGGCTAAGCCAGAGCCAGAGAAGCCCAAAGAAGAGGCAGAAGAGGAGGCACCCAAGCCCAAGCCCAAAAATCCCCTTGATCTTCTTCCTCCAAGCAAGATGATATTGGATGAGTGGAAAAGACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAGGATTTTGGGACATGTATGATCCAGAGGGTTATTCTCTCTGGTTCTGTGATTACAAATACAACGACGAGAACACTGTTTCCTTTGTGACATTAAACAAGGTTGGTGGTTTTCTTCAGCGGATGGATCTGGCTCGCAAGTATGCTTTTGGAAAGATGCTTGTAATTGGATCACAGGCACCATTTAAGGTGAAGGGGTTGTGGCTTTTCCGCGGGCAAGAGATTCCACAATTTGTGATTGACGAGTGTTATGATATGGAGCTGTACGAGTGGACCAAGGTTGACATCTCTGACGAAACTCAGAAAGAGCGGGTGAATCAGATGATTGAGGATTATGAACCATTTGAGGGAGAGCCTCTTCTGGATGCTAAGTGCTTCAAGTGA 1119 0.4656 MNPLGKFPVLETPDGPVFESNAIARYVARLNGDNALYLSTPIDNARIDQWIDFSTLEIDSNILKLYLPRFGYAPYLPPAVEAANSALKRALGALNTHLASNTYLVGDSVTLADIITTCNLYLGFTEILVKSFTSEFPHVERYFWTLVNQPNFRKILGQVKQTDVVPPLQSAKKPAQPKESKPKPKDEPKKVAKPEPEKPKEEAEEEAPKPKPKNPLDLLPPSKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSQAPFKVKGLWLFRGQEIPQFVIDECYDMELYEWTKVDISDETQKERVNQMIEDYEPFEGEPLLDAKCFK 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6533g00021 372 FunFam Elongation factor 1 gamma 33 169 - -
Vium6533g00021 372 FunFam Elongation factor 1-gamma 1 212 372 - -
Vium6533g00021 372 Gene3D Translation elongation factor EF1B, gamma chain, conserved domain 212 372 IPR036433 GO:0003746|GO:0006414
Vium6533g00021 372 MobiDBLite consensus disorder prediction 166 219 - -
Vium6533g00021 372 ProSiteProfiles Elongation factor 1 (EF-1) gamma C-terminal domain profile. 212 372 IPR001662 GO:0003746|GO:0006414
Vium6533g00021 372 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 40 168 IPR010987 -
Vium6533g00021 372 Pfam Glutathione S-transferase, C-terminal domain 79 150 IPR004046 -
Vium6533g00021 372 Gene3D Glutaredoxin 1 30 - -
Vium6533g00021 372 Gene3D - 33 166 - -
Vium6533g00021 372 MobiDBLite consensus disorder prediction 176 212 - -
Vium6533g00021 372 Pfam Glutathione S-transferase, N-terminal domain 1 29 IPR004045 -
Vium6533g00021 372 SUPERFAMILY eEF1-gamma domain 212 372 IPR036433 GO:0003746|GO:0006414
Vium6533g00021 372 SUPERFAMILY GST C-terminal domain-like 26 164 IPR036282 -
Vium6533g00021 372 SMART EF1G_2 211 319 IPR001662 GO:0003746|GO:0006414
Vium6533g00021 372 PANTHER ELONGATION FACTOR 1-GAMMA 1-RELATED 1 372 IPR044628 GO:0004364
Vium6533g00021 372 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 1 35 IPR004045 -
Vium6533g00021 372 Pfam Elongation factor 1 gamma, conserved domain 211 319 IPR001662 GO:0003746|GO:0006414
Vium6533g00021 372 SFLD Glutathione Transferase (cytosolic) 2 143 IPR040079 -
Vium6533g00021 372 SUPERFAMILY Thioredoxin-like 1 41 IPR036249 -
Vium6533g00021 372 CDD GST_C_EF1Bgamma_like 43 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6533g00021 Vium-Chr6533 66196 68470 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6533g00021 1 372 Eukaryotic Initiation Factors Gene Family AT1G57720 76.075 0.0 559
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6533g00021 K03233 - gmx:100795680 624.009