Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6533g00016 ATGGGTTGCATATGCTCCAAAGCAAAATCATCATCATCACACCAATACGTTTCTCAAAACCATACCGAAGGTTTGAAGGCCACTCCATCCCCCAACACCAACACTTTCGGGGACACCACTTCCCTCATATCCAATGTAAATCAATATTCCTATTCAAGTTCAAATGCAACTCAAGAAAAAGCCTCCACCCCAATTTTCTCGGACCAAATTCAACAGAAAGGGGACAAGAAAGCCAATGGTAATGGGGTGCGATCAACGACACAAACACAACTACAACAACCTAAGATGTCTAGGTTGTATAGTATAACCAGAGGGGAAAGAGGAGTACAGGTTCTCGCTGGGTGGCCCTCTTGGCTCTCTGCAGTTGCTGGTGAAGCCATTAGTGGCTGGATACCTCGTAGGGCTGATTCCTTTGAGAAGTTGGATAAGGCAATTCCTATTGTTATTCATTGCTTTCTCTTTCCATCCTTATTTAATGTCACTTACCAAACAAACTTACCTGTCATGTTGCAGATTGGCCAAGGAACTTACAGCAGTGTTTATAAAGCTCGTGATCTTGAAACAAATAAAATTGTTGCACTGAAGAAGGTTCGATTTACTAATATGGATCCAGAAAGCGTTCGTTTTATGTCAAGGGAGGTTATTGTGCTGCGGAGGCTTGATCATCCCAATGTCATGAAGCTTGAGGGCATGATTGCCTCACGGGTCTCTGGTAGCTTGTACCTTATCTTTGAATATATGGAGCACGATCTTGCAGGACTTGCAGCAATACCCGACATCAAGTTTTCCGAAGCACAGATCAAGTGTTACATGCAACAGCTTCTTCGTGGTCTAGAGCATTGCCACAGTCGTGGTGTCATGCATCGTGACATAAAAGGTTCAAATCTTCTGATTGACAGTAATGGCAGACTGAAGATTGCTGATTTTGGGCTAGCAACTTTGCTTCAGTCATCTCAGGGGCTGCCTTTAACAAGTCGGGTAGTGACCTTGTGGTACAGGCCACCTGAACTTTTACTTGGAGCTACAGATTATGGAACTACTGTGGATTTGTGGAGTGCTGGATGTATTCTTGCAGAGTTGTTTGTTGGGAAGCCTATACTGTCTGGACGAACAGAGGTGGAGCAACTACATAAAATCTTCAAACTGTGTGGATCTCCTTCTGAAGAATACTGGAAGAAGTCAAAGTTGCCGCATGCAACAATTTTTAAACCTCAGCATCCTTACATACGTGTTGTTTCTCAGACATTCAAGGATTTTCCTTCATCTACACTGAGCCTCTTGGAGGTCCTTCTAGCTGTTGAATCGGATGATCGGGGAACTGCATCTTCAGCACTTCGGCATGAGTTCTTCACAACAATGCCACTTCCTTGTGATCCATCATCTTTGCCAAAGTACCCACCGAGTAAGGAGTTTGATGCGAAACTTCGCCAAGAGGAAGCTAAAAGGCGAAGAGCACCAAATAAAGGACATGAATACGAATCACTAGGGAATAATTTTAGAGAGTCTACAGCTGTGCCAGTACCTGGTACTAATGCTGAGTTTCAGGCCACTACAGGGAAACCAGGACTGTGTAATGTTAAGCACGTCTCTGAGAAGTACAATTACGAAAAGGATGACGGTTATGGCTTCTCTCGCGAACCTGTAAAGGCAACGTCAACAACACACAATGTATTTTCTCATTCTGGCCAGTCAATGCATCCAAGTGTTTATGGATCCTCACGCACTAGGAATTTGAAAGAGGAAAATGTCCTCATATGCCCTGATCATGCCTTTATATCAAGAAAGTCTGAGTTGAGCAAACATACTTCGTATTGGCAAGGTAGTGCCGCAAAATTGTCAAGATTTTCTAATTCAATTGCAGCTCGAGGTGATTCACTTCTTGAAATGAGTGGTGGTGACTTTAGTGTGAATTCGCAGTTGCCAGAAGATCAATTTGGCACGAGATATAGCCATAAAGCAGATGGTGAGTCCAACCAATTGTTGGATGGACTCAAATCTTAA 2001 0.4338 MGCICSKAKSSSSHQYVSQNHTEGLKATPSPNTNTFGDTTSLISNVNQYSYSSSNATQEKASTPIFSDQIQQKGDKKANGNGVRSTTQTQLQQPKMSRLYSITRGERGVQVLAGWPSWLSAVAGEAISGWIPRRADSFEKLDKAIPIVIHCFLFPSLFNVTYQTNLPVMLQIGQGTYSSVYKARDLETNKIVALKKVRFTNMDPESVRFMSREVIVLRRLDHPNVMKLEGMIASRVSGSLYLIFEYMEHDLAGLAAIPDIKFSEAQIKCYMQQLLRGLEHCHSRGVMHRDIKGSNLLIDSNGRLKIADFGLATLLQSSQGLPLTSRVVTLWYRPPELLLGATDYGTTVDLWSAGCILAELFVGKPILSGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHATIFKPQHPYIRVVSQTFKDFPSSTLSLLEVLLAVESDDRGTASSALRHEFFTTMPLPCDPSSLPKYPPSKEFDAKLRQEEAKRRRAPNKGHEYESLGNNFRESTAVPVPGTNAEFQATTGKPGLCNVKHVSEKYNYEKDDGYGFSREPVKATSTTHNVFSHSGQSMHPSVYGSSRTRNLKEENVLICPDHAFISRKSELSKHTSYWQGSAAKLSRFSNSIAARGDSLLEMSGGDFSVNSQLPEDQFGTRYSHKADGESNQLLDGLKS 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6533g00016 666 Gene3D Phosphorylase Kinase; domain 1 162 248 - -
Vium6533g00016 666 FunFam probable serine/threonine-protein kinase At1g54610 162 248 - -
Vium6533g00016 666 MobiDBLite consensus disorder prediction 60 84 - -
Vium6533g00016 666 PANTHER CELL DIVISION PROTEIN KINASE 169 456 - -
Vium6533g00016 666 SUPERFAMILY Protein kinase-like (PK-like) 170 458 IPR011009 -
Vium6533g00016 666 MobiDBLite consensus disorder prediction 637 666 - -
Vium6533g00016 666 FunFam probable serine/threonine-protein kinase At1g54610 249 490 - -
Vium6533g00016 666 MobiDBLite consensus disorder prediction 1 39 - -
Vium6533g00016 666 CDD STKc_CDK9_like 171 450 - -
Vium6533g00016 666 ProSiteProfiles Protein kinase domain profile. 166 450 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6533g00016 666 Gene3D Transferase(Phosphotransferase) domain 1 249 489 - -
Vium6533g00016 666 Pfam Protein kinase domain 171 450 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6533g00016 666 ProSitePatterns Protein kinases ATP-binding region signature. 172 195 IPR017441 GO:0005524
Vium6533g00016 666 SMART serkin_6 166 450 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6533g00016 666 ProSitePatterns Serine/Threonine protein kinases active-site signature. 286 298 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6533g00016 Vium-Chr6533 51954 57268 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6533g00016 171 482 Core Cell Cycle Gene Families AT5G10270 49.235 2.86e-104 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vium6533g00016 Pkinase 5e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6533g00016 - - gmx:100805055 889.797