Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6533g00012 ATGGCGGTAACTAGAAGAAGAGACGGTATGCGTGGCGTCCACCAGTGGGCGTGGCCTAAACCCAATAAATGGGTGAAGGGGAAACTGGTTGGATGTGGATCTTTCGGCACTGTGCATTTGGCGATGAACAAATCAACGGGTGCCCTTTTTGTTGTAAAATCATCACATTCGAGGGCTGGACGTGAGGCTTTGGATGAAGAGGTAAAAATCCTGAAAATATTTAATTCTTCACCGTACATTGTCCAATGTTTAGGGACAGAGGAGGAGGAGCAGGGCAAGGTGAATGTTTTTATGGAGTATATGTCAGGAGGTAGTTTGGCAGACGTGGCTCACAAATTCGGTGGGTCATTGGATGAAGAGGTGGTTCGTGTGTATACCAGGGAAATTCTTCACGGCCTGAACCATCTTCACCTTCATGGTATTGTACACTGCGATCTCAAGTGCAAGAACGTGCTTTTGGACCCACATGGCAACGTGAAGCTGGCAGATTTTGGATGTGCCAGAAGGGCAAATGAGTTGGGAAAGTCATTTGGTGGGACCCCTCTGTGGATGGCTCCTGAAGTGCTGAGGAACGAGTCTGTTGATTTGTCTGCAGATATATGGTCCTTGGGATGCACAGTTATTGAGATGGCTACTGGCAGTCCTCCTTGGGCTCATCAGGTTTCAAATCACGTCAGTGATGTGCTCTGGATTGCCCATGGTGATGCTATTCCTCAGTTTCCACCCCATTTCTCCAAGGAGGGTTTGGATTTCTTGAGCATGTGCTTGCAGAGAGATCCCCGTAAGAGGTCTACGCCTCAGCAGTTACTTTCTCATCCCTTTGTTACATCAACACCACCTTCTCAACATCAACAACAAAAACAACATGCTTCCTCTCCGGCAAGCGTCTTGGAGGTTCACGATTTCAGGGACTCTTGTGATGTACATGATTTCTCTCTCACAAACACACTTGCATCTTACACTGATTACTCCAAAGGAATAGCTGTGTGTAAAGCAGAAGACAGTGCCTTGGGCTCATCGGGGAATTGGATTACAGTTAGATCAGGCTGA 1050 0.4733 MAVTRRRDGMRGVHQWAWPKPNKWVKGKLVGCGSFGTVHLAMNKSTGALFVVKSSHSRAGREALDEEVKILKIFNSSPYIVQCLGTEEEEQGKVNVFMEYMSGGSLADVAHKFGGSLDEEVVRVYTREILHGLNHLHLHGIVHCDLKCKNVLLDPHGNVKLADFGCARRANELGKSFGGTPLWMAPEVLRNESVDLSADIWSLGCTVIEMATGSPPWAHQVSNHVSDVLWIAHGDAIPQFPPHFSKEGLDFLSMCLQRDPRKRSTPQQLLSHPFVTSTPPSQHQQQKQHASSPASVLEVHDFRDSCDVHDFSLTNTLASYTDYSKGIAVCKAEDSALGSSGNWITVRSG 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6533g00012 349 Gene3D Transferase(Phosphotransferase) domain 1 21 331 - -
Vium6533g00012 349 ProSiteProfiles Protein kinase domain profile. 24 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6533g00012 349 MobiDBLite consensus disorder prediction 264 293 - -
Vium6533g00012 349 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
Vium6533g00012 349 SMART serkin_6 24 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium6533g00012 349 FunFam MAP kinase kinase kinase18 19 325 - -
Vium6533g00012 349 MobiDBLite consensus disorder prediction 264 294 - -
Vium6533g00012 349 SUPERFAMILY Protein kinase-like (PK-like) 22 306 IPR011009 -
Vium6533g00012 349 ProSitePatterns Protein kinases ATP-binding region signature. 30 53 IPR017441 GO:0005524
Vium6533g00012 349 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 24 293 - -
Vium6533g00012 349 CDD STKc_MAPKKK 23 275 - -
Vium6533g00012 349 Pfam Protein kinase domain 26 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6533g00012 Vium-Chr6533 35726 37433 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6533g00012 21 330 MAP Kinase Kinase Kinase AT1G54960 40.367 2.30e-68 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vium6533g00012 Pkinase 1.9e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6533g00012 K20716 - gmx:100804518 471.085