Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6533g00003 ATGGAAGACGGCAAGAGTATGGGTCGAAAGGAGAAGAGGAAGGCAATGAAGAAAATGAAGCGGAAGCAGACGAGGAAGGAGGCGGCGGAGAGTGAACGACGGGAGGAGGAGGACCGCCTCAACGATCCGGAGGAGCAGAGGCGGATGCAATTGCTGGAGCAGGAGGAGGCGGAGAGAATGCAGAGGGACACGATCCTCTTTCAGGAGAGGGAGAAGGCTTTCATGGATATGATAATCACCCGACAACGACAGCAGCAGCAGCAGCAAGAACGAGACCAAGAGCAGAGCATCGACCACGACAACGAATTTGAATACGTGGTTCAGGAAGAAGGCCCTCCGGAGATTATTTGGCAAGGAAACGAGATCATCTTCAATAAGAAACAGCTCAGAGTCAGGGTTCCGGACACCGACACCCACAATAACTATTCGCAGCAGAATGACGACATTAGACCTACATCCAATCCCTTACCCCCGGAATCGGAATCGGAATCGCGCACTCAGAACCTCCAGGACGTTGCTCAACAAATACCCAATTTCGGAACGGAACAGGATAAAGCTCATTGCCCTTTTCATCTAAAAACGGGAGCATGTCGCTTTGGTAGGCGCTGTAGTAGAGTCCATTTTATCCCTGATAAATCCTCCACTCTTCTAATGGAAAACATGTACAACGGTCCTGGCCTTGCTTGCGATCGGGACCAAGACGAGGGCCTCGAGTATACAGATGAAGAGATTGATCGCTGCTTTGAAGAATTTTATGAGGATGTCCACACAGAATTCTTGAAGTTTGGGGAAATTGTGAACTTCAAGGAGCCATTGGAACTAGAGTGTCTCCCTAAGCAATGA 843 0.497 MEDGKSMGRKEKRKAMKKMKRKQTRKEAAESERREEEDRLNDPEEQRRMQLLEQEEAERMQRDTILFQEREKAFMDMIITRQRQQQQQQERDQEQSIDHDNEFEYVVQEEGPPEIIWQGNEIIFNKKQLRVRVPDTDTHNNYSQQNDDIRPTSNPLPPESESESRTQNLQDVAQQIPNFGTEQDKAHCPFHLKTGACRFGRRCSRVHFIPDKSSTLLMENMYNGPGLACDRDQDEGLEYTDEEIDRCFEEFYEDVHTEFLKFGEIVNFKEPLELECLPKQ 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6533g00003 280 Gene3D - 213 274 IPR012677 -
Vium6533g00003 280 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 166 269 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vium6533g00003 280 MobiDBLite consensus disorder prediction 136 167 - -
Vium6533g00003 280 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 187 207 IPR000571 GO:0046872
Vium6533g00003 280 Coils Coil 12 46 - -
Vium6533g00003 280 MobiDBLite consensus disorder prediction 1 61 - -
Vium6533g00003 280 PRINTS U2 auxiliary factor small subunit signature 188 207 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vium6533g00003 280 PRINTS U2 auxiliary factor small subunit signature 245 260 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vium6533g00003 280 PRINTS U2 auxiliary factor small subunit signature 207 227 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vium6533g00003 280 MobiDBLite consensus disorder prediction 23 61 - -
Vium6533g00003 280 MobiDBLite consensus disorder prediction 80 99 - -
Vium6533g00003 280 ProSiteProfiles Zinc finger C3H1-type profile. 182 210 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6533g00003 Vium-Chr6533 5901 11182 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vium6533g00003 zf-CCCH 0.00015 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6533g00003 K24273 - vum:124843542 470.314