Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6532g00003 ATGAAGTTCTGCAAAAAATACCAGGAATACATGCAAGGCCAGGAGAAGAAGCTTCCAGGCGTAGGATTCAAGAAGCTCAAGAAAATCTTGAAGAGGTGCAGGAAAAACTCTCCATCTCAGAAACCCCTTAATGCACCCCTTGCCGCCAAAACCTGCCCTGACCAATGCCCAGTGTGCGATGGAACCTTCTTCCCTTCCCTTCTGAATGAAATGTCAGATGTAGTGGGGTGTTTTAATCAGCGTGCGCAGAAATTGTTGGAGCTGCATCTCGCTTCTGGCTTCAGAAAGTACTTTTTCTGGATCAAAGGCAGATTGCAAGGAAACCATACTGCTCTGGTTCAAGAAGGCAAAGATCTTGTCACTTATGCACTCATAAATGCCATTGCAATTAGAAAAATACTCAAGAAATATGATAAGATTCATTATTCGAAGCAAGGGCAATTATTCAAGTCGCAGGTCCAGAGTATGCACAAGGAGATTCTTCAGAGTCCCTGGCTTTGTGAGCTTATGGCCTTCCACATCAATTTAAGGGAAACTAAGGTCAAGTCAAGGAAGGCACATGCTCTGTTCGATGGATGTTCTCTCACAATTAAGGATGGGAAGCCCTCCCTTACTTGTGAGCTCTTTGATTCTATCAAATTGGATGTTGACTTGACTTGTTCTATATGCTTGGACACAGTGTTTGATCCAGTTTCTCTGACTTGTGGCCACATATTCTGCTATATCTGTGCTTGCTCGGCTGCATCAGTATCTATTGTTGACGGACTTAAGTCTGCAGATTCTAGAAAGAAATGTCCTCTATGCCGCGAGGACTCTGTATATGAAGGTGCTGTTCACTTGGAAGAACTGAATATTCTGTTAGGCAGAAGCTGTCAGGAATACTGGGAGCAGAGGCTTGAGACTGAGAGGGTGGAGAGGATTAAGCAAATAAAGGAACACTGGGATTCACAGTGTAGGGCATTCGTAGGTGTCTAA 975 0.44 MKFCKKYQEYMQGQEKKLPGVGFKKLKKILKRCRKNSPSQKPLNAPLAAKTCPDQCPVCDGTFFPSLLNEMSDVVGCFNQRAQKLLELHLASGFRKYFFWIKGRLQGNHTALVQEGKDLVTYALINAIAIRKILKKYDKIHYSKQGQLFKSQVQSMHKEILQSPWLCELMAFHINLRETKVKSRKAHALFDGCSLTIKDGKPSLTCELFDSIKLDVDLTCSICLDTVFDPVSLTCGHIFCYICACSAASVSIVDGLKSADSRKKCPLCREDSVYEGAVHLEELNILLGRSCQEYWEQRLETERVERIKQIKEHWDSQCRAFVGV 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6532g00003 324 ProSiteProfiles SPX domain profile. 1 151 IPR004331 -
Vium6532g00003 324 SMART ring_2 220 268 IPR001841 -
Vium6532g00003 324 SUPERFAMILY RING/U-box 213 272 - -
Vium6532g00003 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 207 322 IPR013083 -
Vium6532g00003 324 CDD SPX_BAH1-like 2 147 - -
Vium6532g00003 324 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 323 IPR033326 -
Vium6532g00003 324 Pfam Zinc finger, C3HC4 type (RING finger) 217 271 - -
Vium6532g00003 324 ProSitePatterns Zinc finger RING-type signature. 235 244 IPR017907 -
Vium6532g00003 324 ProSiteProfiles Zinc finger RING-type profile. 220 269 IPR001841 -
Vium6532g00003 324 CDD RING-HC_BAH1-like 210 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6532g00003 Vium-Chr6532 18565 21636 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6532g00003 217 271 C3H Transcription Factor Family AT4G28270 41.667 1.98e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6532g00003 K16275 - gmx:100787904 626.706