Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6532g00002 ATGTCCCTTGCATCTTCAACCCTCTTTTGTGCATTCCCTGTGAAACAAACCTCCGAGGACACGTTTGTCTCAACTATGCTTCAATGGCTGAGATATATTTTCCTCACACCTTGTACTCAAAGAGCTATATTGTCTTTCGTTGATGTCGTGCTCCTCGTGTTTCTCTTCGTGTTTGCTGCCACCAGGCTCTGGAAAAGGTCCACCTTCAATGGTGGCTCCAATACCGACCTCAGCAGACCATTCATCAGAAAGAACAGACCCGTTTTCTCAATAACTGTGCGGTTTAAGTTAACCATAACTGTAGTGGTTGTTTTGACTATACTCTACACGGTTGCTTCTGTTCTTACGTTTAGCAGTTCCGCCATGGCGCCGTGGAAGCAGGTTGACGAGGTGTTTTGGTTAGTCCAAGCCATAACACATGCTGTGCTTGCATTCTTCATCATCCACGAGAAAAGGTTTCAGGTCGTTGCACACCCTCTATCCGTTCGAGTTTATTGGATTGTATCTTTCTTTGTCATTTCTTTGTTCACTGTTTCTGCGGTTATACGTTTGGTCTCGGGGGACGTGGATGAAGCCTTCGGCTTCGGGGTGGACGAGGTGGTCTCTTTCATTTCGTTCCCGCTGTCGTTATTTCTTCTTTTTGTGGCGGTTAAAGGATCCACCGGCATTGTTTTGGCTACAGAAGAAACACGATCACTTGTGGATGGAAAAGCTAAGTTGCATGATGGTACTGAGAGAAAATCCGAGGTTACTGGTTTTGCTTCAGCTTCTCTATTATCCAAGGCTTTTTGGATTTGGATAAACCCCTTACTGAGTAAAGGGTACATGTCCGTGCTGAAGATTGATGAGATTCCAACGCTTTCTCCGGAGCATAGAGCTGAGAGAATGTCATCCATTTTTGAATCTAAATGGCCTATTTCAAACGAGACATCAAAGCATCCTGTTAGAATGACTTTGCTTCGGTGCTTTTGGAAGGAGTTAGCCCTCAATGCCGTGCTTGCAATCATTAGGCTCTGTGTCATGTTTGTGGGGCCGATTCTGATACAAAGTTTTGTGGATTTCACATCAGGCAAGAGAAGCTCTGAATATGAAGGATACTATCTCGTGTTGATTCTTTTCGTTGCTAAGTTCATTGAAGTCATGGCTACTCATCATTTCAACTTCCAAGCTCAGAAGCTTGGGATGCTTATACGCTCCACTCTTATCTCCTCTTTGTATAGAAAGGGGTTAAAGCTATCATTCTCTTCTCGGAAGGAACATGGAGTTGGGACAATTGTGAATTACATGGCTGTGGATACCCAGCAACTCTCTGACATGATGCTCCAGTTACATGCTGTGTGGATGATGCCACTCCAATTTGGTATTGGCTTGGTTCTGCTTTACAATTGTTTAGGTGCCTCAGTTATAGGCGCGTTTCTTGCTCTGCTCTGTGTTTTTATCTATTCTGTGATGGGCAACCAAAGAAACAACAAGTTCCAACAAAATCTGATGGTGAGCCGGGACTCCAAAATGAAAGCTGTGAATGAGATGCTTAGCTTCATGCGTGTGATCAAGTATCAGGCCTGGGAGGAACATTTCAATCAGAGAATTTTGGGTTTCCGTGAAACGGAGTATGGGTGGCTCTCCAAGCTGCTGTTCTCAATTTGTGGCACCACTGTTGTGTTGTGGAGCACACCGTTTTTGGCGTCAACTCTTACATTTGGAACGGCTATTTTGTTGGGAGTTCAACTTGATGCAGGCACAGTGTTCACTACAACAGCTGTGTTCAGGTTATTGCAGGAGCCTATTAGGACATTCCCACAGTCTATGATATCTCTTTCACAAGCAAGGATATCACTGGAGAGGTTAGACAGGTTCATGTTGAGCGGAGAATTGTCAAATGATTCAGTTGAGAGAGAGGACGGATTTGGTGGACAGACAGCCGTGGAAATCATACATGGAATTTTTAGTTGGGATGATGATAATACTCAGCAGGACTTGAAAAATATCAATTTGAAAATTAAAAAGGGTGAGCTTACAGCAATTGTTGGGACCGTAGGGTCAGGAAAGTCGTCCCTTCTTGCATCAATTCTTGGAGAGATGCACAAGATTTCTGGAAAGGTTCGGGTTTTTGGGAGTGTTGCTTATGTTGCACAGACATGTTGGATTCAAAATGGGACCATTGAAGAAAACATTCTCTTCGGTTTACCTATGGACAGAGAGAGGTATGTTGAAGTTATCAGGGTTTGCTGTTTGGAGAAAGATTTGGAAATGATGGATTATGGGGATCAGACAGAAATTGGAGAACGTGGTATCAACCTAAGCGGAGGCCAGAAGCAGCGTATACAACTTGCCAGGGCAGTGTATCAAGACTATGATGTATATCTTCTTGATGATGTTTTCAGTGCTGTTGATGCTCATACTGGTTCTGAAATATTTAAGGAATGCGTGAGGGGAGCTCTAAGAGGCAAGACCACTATTCTTGTAACACATCAAGTAGATTTCTTACGTAATGTGGATCGTATATTAGTGACGAGGGACGGTAAGATAGTTGAATCAGGGAAATATGATGATCTATTAGAGTCTGGAATGGATTTTAAAGCTCTCGTCGTTGCGCATGAGAGCTCCATGCAATTAGTGGAGCACAGTATGGTCATGCCAGGTGAAAATCTGAACAGACCAACGATGGCTCTAGAGACAGCTTCAATTAACAGGGGAACCAATGGTGAAAACAATTCTATTGATAAGCCTAAGTGTGGCAAGAAAAGCTCTAAACTCGTCCAAGAAGAGGAGAGAGCAACTGGAAAAGTGAGCTTACGTATGTATAAACTCTATTGCACTGAGGCGTTTGGGTGGTGGGGCATTACAATTGTATTGGTCCTGTCTTTGTTATGGCAAGTGTCTTTGATGGCAAGTGATTATTGGTTGGCATATGAAACCTCAGAAGAACGTGCTAAATTGTTTAACCCTTCTCTGTTCATCTACGTCTATGCAATTATTGCTGTTGTTTCCAGTGTTTTGTTAGTGGCAAGATCCTACTTCTTTACTCTCATGGGGCTAAGGACAGCACAATTATTCTTCACACAAATTCTTCATAGCATCTTGCATGCGCCCATGTCTTTCTTTGACACCACACCATCTGGAAGAATTCTAAGTAGGGCATCCACTGATCAAGCCAATCTTGATGTCCTTCTACCCTTATATATGGGAGCTATTATAATCATGCACTTATCGATGCTCGGCATCTTCATCATAACCTGTCAAAATTCTTGGCCAACGCTGATTTTGATAATTCCTCTTGTCTGGTTAAATATGTGGTACCGGGGTTACTATCTTGCATCATCTCGGGAATTTACTCGCATGGATTCAATCACCAAAGCCCCAGTTATTCATCACTTCTCTGAAAGCATTGCAGGGGTCATGACAATCCGTTCATTCAGAAAGCAAAAGATATTCTGTGATGAAAATCTGAAACGGGTGAATGGTAATTTGAGAATAGATTTCCACAACTATAGTTGTAATGAGTGGTTGGGATTTCGCTTAGAATTGATTGGAAGCTTTGTCTTTTGCATTTCTGCCATGTTCATGATCATCTTACCCAGCAGTATCATAAAGCCAGAAAATGTCGGTTTATCTCTCTCTTATGGGTTGTCCTTAAACACTGTCTTGTTCTGGGCTGTATACATGAGTTGTTTCATCGAAAACAAGATGGTGTCTGTTGAGAGGATAAAGCAGTTTACAAATATTCCATCGGAACCAGCATGGAATATCAAGGATCACCTACCTCCTTCAAATTGGCCCGGTCAAGGCAATGTAGATATCAGAGACTTGCAGGTCAGATATCGTCCAAATACTCCTCTGGTGCTCAAAGGCATTACTTTAAGCATTACCGGAGGTGAAAAAGTTGGTGTTGTGGGTCGAACTGGGAGTGGAAAGTCAACTTTAATTCAAGTATTATTTAGGCTGGTGGAACCTTCGGGAGGGAAAATAGTGGTTGACGGTATTGACATATCCATCTTGGGACTTCACGATCTTAGATCACGGTTTGGCATCATTCCTCAGGAGCCTGTGCTTTTTGAAGGAACTGTCAGAAGCAACATTGATCCAATTGGACAACATACAGATGAAGAAATATGGAAGAGCTTGGAGCGTTGTCAGCTAAAAGATGTNATCAATCTGAACTAA 4164 0.4268 MSLASSTLFCAFPVKQTSEDTFVSTMLQWLRYIFLTPCTQRAILSFVDVVLLVFLFVFAATRLWKRSTFNGGSNTDLSRPFIRKNRPVFSITVRFKLTITVVVVLTILYTVASVLTFSSSAMAPWKQVDEVFWLVQAITHAVLAFFIIHEKRFQVVAHPLSVRVYWIVSFFVISLFTVSAVIRLVSGDVDEAFGFGVDEVVSFISFPLSLFLLFVAVKGSTGIVLATEETRSLVDGKAKLHDGTERKSEVTGFASASLLSKAFWIWINPLLSKGYMSVLKIDEIPTLSPEHRAERMSSIFESKWPISNETSKHPVRMTLLRCFWKELALNAVLAIIRLCVMFVGPILIQSFVDFTSGKRSSEYEGYYLVLILFVAKFIEVMATHHFNFQAQKLGMLIRSTLISSLYRKGLKLSFSSRKEHGVGTIVNYMAVDTQQLSDMMLQLHAVWMMPLQFGIGLVLLYNCLGASVIGAFLALLCVFIYSVMGNQRNNKFQQNLMVSRDSKMKAVNEMLSFMRVIKYQAWEEHFNQRILGFRETEYGWLSKLLFSICGTTVVLWSTPFLASTLTFGTAILLGVQLDAGTVFTTTAVFRLLQEPIRTFPQSMISLSQARISLERLDRFMLSGELSNDSVEREDGFGGQTAVEIIHGIFSWDDDNTQQDLKNINLKIKKGELTAIVGTVGSGKSSLLASILGEMHKISGKVRVFGSVAYVAQTCWIQNGTIEENILFGLPMDRERYVEVIRVCCLEKDLEMMDYGDQTEIGERGINLSGGQKQRIQLARAVYQDYDVYLLDDVFSAVDAHTGSEIFKECVRGALRGKTTILVTHQVDFLRNVDRILVTRDGKIVESGKYDDLLESGMDFKALVVAHESSMQLVEHSMVMPGENLNRPTMALETASINRGTNGENNSIDKPKCGKKSSKLVQEEERATGKVSLRMYKLYCTEAFGWWGITIVLVLSLLWQVSLMASDYWLAYETSEERAKLFNPSLFIYVYAIIAVVSSVLLVARSYFFTLMGLRTAQLFFTQILHSILHAPMSFFDTTPSGRILSRASTDQANLDVLLPLYMGAIIIMHLSMLGIFIITCQNSWPTLILIIPLVWLNMWYRGYYLASSREFTRMDSITKAPVIHHFSESIAGVMTIRSFRKQKIFCDENLKRVNGNLRIDFHNYSCNEWLGFRLELIGSFVFCISAMFMIILPSSIIKPENVGLSLSYGLSLNTVLFWAVYMSCFIENKMVSVERIKQFTNIPSEPAWNIKDHLPPSNWPGQGNVDIRDLQVRYRPNTPLVLKGITLSITGGEKVGVVGRTGSGKSTLIQVLFRLVEPSGGKIVVDGIDISILGLHDLRSRFGIIPQEPVLFEGTVRSNIDPIGQHTDEEIWKSLERCQLKDVINLN 1387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6532g00002 1387 SUPERFAMILY ABC transporter transmembrane region 945 1245 IPR036640 GO:0005524|GO:0016020
Vium6532g00002 1387 CDD ABCC_MRP_domain1 642 842 - -
Vium6532g00002 1387 CDD ABC_6TM_ABCC_D1 329 616 IPR044746 GO:0140359
Vium6532g00002 1387 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1258 1385 IPR027417 -
Vium6532g00002 1387 FunFam ABC transporter C family member 10 311 624 - -
Vium6532g00002 1387 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 328 608 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium6532g00002 1387 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 642 862 IPR027417 -
Vium6532g00002 1387 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 642 865 IPR003439 GO:0005524
Vium6532g00002 1387 FunFam ABC transporter C family member 4 625 883 - -
Vium6532g00002 1387 Gene3D - 624 880 IPR027417 -
Vium6532g00002 1387 SMART AAA_5 1291 1387 IPR003593 GO:0016887
Vium6532g00002 1387 SMART AAA_5 669 850 IPR003593 GO:0016887
Vium6532g00002 1387 CDD ABC_6TM_ABCC_D2 948 1240 IPR044726 GO:0140359
Vium6532g00002 1387 FunFam ATP binding cassette subfamily C member 11 1250 1382 - -
Vium6532g00002 1387 Pfam ABC transporter 660 793 IPR003439 GO:0005524
Vium6532g00002 1387 FunFam ABC transporter C family member 5 912 1246 - -
Vium6532g00002 1387 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 254 1381 - -
Vium6532g00002 1387 ProSitePatterns ABC transporters family signature. 767 781 IPR017871 GO:0005524|GO:0016887
Vium6532g00002 1387 SUPERFAMILY ABC transporter transmembrane region 318 616 IPR036640 GO:0005524|GO:0016020
Vium6532g00002 1387 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 950 1228 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium6532g00002 1387 Pfam ABC transporter 1282 1382 IPR003439 GO:0005524
Vium6532g00002 1387 Gene3D - 1249 1386 IPR027417 -
Vium6532g00002 1387 Pfam ABC transporter transmembrane region 950 1201 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium6532g00002 1387 Pfam ABC transporter transmembrane region 329 595 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium6532g00002 1387 Gene3D ABC transporter type 1, transmembrane domain 911 1246 IPR036640 GO:0005524|GO:0016020
Vium6532g00002 1387 Gene3D ABC transporter type 1, transmembrane domain 312 623 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6532g00002 Vium-Chr6532 11967 17572 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6532g00002 598 858 Calmodulin-binding Proteins AT2G36910 32.734 7.82e-28 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6532g00002 - K05666 vum:124843531 2675.2