Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium652g00005 ATGGGTGAGTTTGGCGTTCCCCACATGAGAAAAAGAAGTAGCAGCGACAACAGTGGTGGTAGCTTTGTTGGGTTGGATGTGAGAGTGCAGAGCCCTGAAGCATTATTCCATAATAAGATGACGATGATGGCGCATCATAATCATCACCACCGTCCATTGTCATCACCCTTTGATAATGATTCCTGTGCTGGTGATGGCGATGGTCCCACGGCTTACATGTCTTTTACTAATCATATAAACCTTGTTAGTGGAGCTTCTGTTCTCGCTCCTGCTATTGATGGTGGCTGTGGTGCTCCTGCACCTGTAAGGACTTTGCAGCCTTTTGACATTTCTCCTTATACTTCTCCCACCACCACCTCTTCTACCTTCAAACTCTCAGCAGGTGGGATGGCGGCTTCGTTGGGGTTCCCTTTCACAAGTGCACAATGGAGGGAGCTTGAAAGACAAGCCATGATATACAAGTACATGATGGCTTCTGTTCCTGTTCCACACGATCTTCTCATCCCTACTTCACTCACACCCTCTTCACGCTCTGCCTGCATGGATGGTGGTTTCAATCTGAGGTTGGCTAGTGGCACTGACCCGGAGCCAGGTAGGTGTAGAAGAACAGATGGTAAAAAATGGAGATGTTCAAGAGATGTGGCTCCAAACCACAAGTACTGTGAGCGCCATATGCACAGAGGGCGTCCCCGTTCAAGAAAGCCTGTGGAAGTTAACACCAAGACCGCCACTCCCACTAGCATCAATAACAATAACCACCAAATCAAGAGGCCTCGCCATGAGTGCAATCCTTTTCCTTCCATACCTGATGTAACCGTGGCCATTTCTAACCCCACATCTAGAAAACATGGACCTTCACCCCATTTTCTTGGCTCTTCCACCACACTGCCGTACCTTGAATGCCCCCTTTCTCTTGCTAACTTTGGTTACAAAGCTGCAAATTTGGACTCCATGGCTTCTGTTTCTGCAAATAAGGAGCCCAGGGGTTTGGACTGGATGCTGAATGGAGATCCTATTTCCCTGGGTGCTTCCGACTCAGAATGGCAGTCTCTGATGCATCACAAAGTTGGACTGAGCAGTGAGAGTTCTTGTAACAATCCCCAGCCTCAGTACTTGAATTCATTTACAGTATACAACACTGGACTGGATCAACAGAACAGACGCCACCCTTTGTTCCTGAATCCTCTGGTTGTTCCTATGGAAAATCTCCAACCAGAGAAGCCAAGAGGTTTCATTGATGCTTGGTCCAACACAGAAAGTGGTGAAAACAATGCCCCCACCAACAGCAAGAACTCTGCTGCATCAATCGGTAAATTGACCCTTTCTTCTCTTGATCTATCAATGGGGGGTGGTGCCGTGAACGAAGATGTAGGTAATGTTAACATAGGGCTGGGCCTAATGGAGTCTATTGCAAACACACACACCGATACCAAAATCTCTCTGTCGAACTGGGTCAACCCTGCACCTTGGGTGGGTTCAACGCTTGGGGGTCCTCTGGCTGAAGTTCTAAGGTCAAGCACAGTGACTGCGACAACGAACGAAAGAACCTCAAACACACCCTCACCAGCCACCACACATGTGGAAAGTAACAGTCCTCTGGGAACAATGGTGTCGTCTCCATCTGGGGTGTTGCAGAAAACGCTTGTTTCATTGTCTGATAGCAGTAGCAATAGCAGCCCAAGGGTTGCATCATCAAGGGCGAATTCTGAGATGGCCCTGCTGAGGTTTCAACGAAATGTAAATTAA 1746 0.4805 MGEFGVPHMRKRSSSDNSGGSFVGLDVRVQSPEALFHNKMTMMAHHNHHHRPLSSPFDNDSCAGDGDGPTAYMSFTNHINLVSGASVLAPAIDGGCGAPAPVRTLQPFDISPYTSPTTTSSTFKLSAGGMAASLGFPFTSAQWRELERQAMIYKYMMASVPVPHDLLIPTSLTPSSRSACMDGGFNLRLASGTDPEPGRCRRTDGKKWRCSRDVAPNHKYCERHMHRGRPRSRKPVEVNTKTATPTSINNNNHQIKRPRHECNPFPSIPDVTVAISNPTSRKHGPSPHFLGSSTTLPYLECPLSLANFGYKAANLDSMASVSANKEPRGLDWMLNGDPISLGASDSEWQSLMHHKVGLSSESSCNNPQPQYLNSFTVYNTGLDQQNRRHPLFLNPLVVPMENLQPEKPRGFIDAWSNTESGENNAPTNSKNSAASIGKLTLSSLDLSMGGGAVNEDVGNVNIGLGLMESIANTHTDTKISLSNWVNPAPWVGSTLGGPLAEVLRSSTVTATTNERTSNTPSPATTHVESNSPLGTMVSSPSGVLQKTLVSLSDSSSNSSPRVASSRANSEMALLRFQRNVN 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium652g00005 581 MobiDBLite consensus disorder prediction 226 257 - -
Vium652g00005 581 Pfam WRC 195 237 IPR014977 -
Vium652g00005 581 SMART QLQ_2 136 172 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vium652g00005 581 MobiDBLite consensus disorder prediction 1 22 - -
Vium652g00005 581 Pfam QLQ 137 169 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vium652g00005 581 ProSiteProfiles WRC domain profile. 194 238 IPR014977 -
Vium652g00005 581 MobiDBLite consensus disorder prediction 237 253 - -
Vium652g00005 581 ProSiteProfiles QLQ domain profile. 137 172 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vium652g00005 581 PANTHER GROWTH-REGULATING FACTOR 5 117 435 IPR031137 GO:0005634|GO:0006351|GO:0032502
Vium652g00005 581 MobiDBLite consensus disorder prediction 507 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium652g00005 Vium-Chr652 4263 7282 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium652g00005 404 557 GRF Transcription Factor Family AT5G53660 34.524 2.13e-12 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Vium652g00005 WRC 6.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium652g00005 - - gmx:100803096 890.567