Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium652g00003 ATGGGTGAGTTTGGCGTTCCCCACATGAGAAAAAGAAGTAGCAGCGACAACAGTGGTGGTAGCTTTGTTGGGTTGGATGTGAGAGTGCAGAGCCCTGAAGCATTATTCCATAATAAGATGACGATGATGGCGCATCATAATCATCACCACCGTCCATTGTCATCACCCTTTGATAATGATTCCTGTGCTGGTGATGGCGATGGTCCCACGGCTTACATGTCTTTTACTAATCATATAAACCTTGTTAGTGGAGCTTCTGTTCTCGCTCCTGCTATTGATGGTGGCTGTGGTGCTCCTGCACCTGTAAGGACTTTGCAGCCTTTTGACATTTCTCCTTATACTTCTCCCACCACCACCTCTTCTACCTTCAAACTCTCAGGTGGGATGGCGGCTTCGTTGGGGTTCCCTTTCACAAGTGCACAATGGAGGGAGCTTGAAAGACAAGCCATGATATACAAGTACATGATGGCTTCTGTTCCTGTTCCACACGATCTTCTCATCCCTACTTCACTCACACCCTCTTCACGCTCTGCCTGCATGGATGGTGGTTTCAATCTGAGGTTGGCTAGTGGCACTGACCCGGAGCCAGGTAGGTGTAGAAGAACAGATGGTAAAAAATGGAGATGTTCAAGAGATGTGGCTCCAAACCACAAGTACTGTGAGCGCCATATGCACAGAGGGCGTCCCCGTTCAAGAAAGCCTGTGGAAGTTAACACCAAGACCGCCACTCCCACTAGCATCAATAACAATAACCACCAAATCAAGAGGCCTCGCCATGAGTGCAATCCTTTTCCTTCCATACCTGATGTAACCGTGGCCATTTCTAACCCCACATCTAGAAAACATGGACCTTCACCCCATTTTCTTGGCTCTTCCACCACACTGCCGTACCTTGAATGCCCCCTTTCTCTTGCTAACTTTGGTTACAAAGCTGCAAATTTGGACTCCATGGCTTCTGTTTCTGCAAATAAGGAGCCCAGGGGTTTGGACTGGATGCTGAATGGAGATCCTATTTCCCTGGGTGCTTCCGACTCAGAATGGCAGTCTCTGATGCATCACAAAGTTGGACTGAGCAGTGAGAGTTCTTGTAACAATCCCCAGCCTCAGTACTTGAATTCATTTACAGTATACAACACTGGACTGGATCAACAGAACAGACGCCACCCTTTGTTCCTGAATCCTCTGGTTGTTCCTATGGAAAATCTCCAACCAGAGAAGCCAAGAGGTTTCATTGATGCTTGGTCCAACACAGAAAGTGGTGAAAACAATGCCCCCACCAACAGCAAGAACTCTGCTGCATCAATCGGTAAATTGACCCTTTCTTCTCTTGATCTATCAATGGGGGGTGGTGCCGTGAACGAAGATGTAGGTAATGTTAACATAGGGCTGGGCCTAATGGAGTCTATTGCAAACACACACACCGATACCAAAATCTCTCTGTCGAACTGGGTCAACCCTGCACCTTGGGTGGGTTCAACGCTTGGGGGTCCTCTGGCTGAAGTTCTAAGGTCAAGCACAGTGACTGCGACAACGAACGAAAGAACCTCAAACACACCCTCACCAGCCACCACACATGTGGAAAGTAACAGTCCTCTGGGAACAATGGTGTCGTCTCCATCTGGGGTGTTGCAGAAAACGCTTGTTTCATTGTCTGATAGCAGTAGCAATAGCAGCCCAAGGGTTGCATCATCAAGGGCGAATTCTGAGATGGCCCTGCTGAGGTTTCAACGAAATGTAAATTAA 1743 0.4802 MGEFGVPHMRKRSSSDNSGGSFVGLDVRVQSPEALFHNKMTMMAHHNHHHRPLSSPFDNDSCAGDGDGPTAYMSFTNHINLVSGASVLAPAIDGGCGAPAPVRTLQPFDISPYTSPTTTSSTFKLSGGMAASLGFPFTSAQWRELERQAMIYKYMMASVPVPHDLLIPTSLTPSSRSACMDGGFNLRLASGTDPEPGRCRRTDGKKWRCSRDVAPNHKYCERHMHRGRPRSRKPVEVNTKTATPTSINNNNHQIKRPRHECNPFPSIPDVTVAISNPTSRKHGPSPHFLGSSTTLPYLECPLSLANFGYKAANLDSMASVSANKEPRGLDWMLNGDPISLGASDSEWQSLMHHKVGLSSESSCNNPQPQYLNSFTVYNTGLDQQNRRHPLFLNPLVVPMENLQPEKPRGFIDAWSNTESGENNAPTNSKNSAASIGKLTLSSLDLSMGGGAVNEDVGNVNIGLGLMESIANTHTDTKISLSNWVNPAPWVGSTLGGPLAEVLRSSTVTATTNERTSNTPSPATTHVESNSPLGTMVSSPSGVLQKTLVSLSDSSSNSSPRVASSRANSEMALLRFQRNVN 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium652g00003 580 MobiDBLite consensus disorder prediction 236 252 - -
Vium652g00003 580 MobiDBLite consensus disorder prediction 506 537 - -
Vium652g00003 580 MobiDBLite consensus disorder prediction 1 22 - -
Vium652g00003 580 ProSiteProfiles QLQ domain profile. 136 171 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vium652g00003 580 SMART QLQ_2 135 171 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vium652g00003 580 Pfam QLQ 136 168 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vium652g00003 580 MobiDBLite consensus disorder prediction 225 256 - -
Vium652g00003 580 PANTHER GROWTH-REGULATING FACTOR 5 116 434 IPR031137 GO:0005634|GO:0006351|GO:0032502
Vium652g00003 580 Pfam WRC 194 236 IPR014977 -
Vium652g00003 580 ProSiteProfiles WRC domain profile. 193 237 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium652g00003 Vium-Chr652 4262 7282 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium652g00003 403 556 GRF Transcription Factor Family AT5G53660 34.524 2.09e-12 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Vium652g00003 WRC 6.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium652g00003 - - gmx:100803096 889.026