Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium652g00002 ATGGGTGAGTTTGGCGTTCCCCACATGAGAAAAAGAAGTAGCAGCGACAACAGTGGTGGTAGCTTTGTTGGGTTGGATGTGAGAGTGCAGAGCCCTGAAGCATTATTCCATAATAAGATGACGATGATGGCGCATCATAATCATCACCACCGTCCATTGTCATCACCCTTTGATAATGATTCCTGTGCTGGTGATGGCGATGGTCCCACGGCTTACATGTCTTTTACTAATCATATAAACCTTGTTAGTGGAGCTTCTGTTCTCGCTCCTGCTATTGATGGTGGCTGTGGTGCTCCTGCACCTGTAAGGACTTTGCAGCCTTTTGACATTTCTCCTTATACTTCTCCCACCACCACCTCTTCTACCTTCAAACTCTCAGGTGGGATGGCGGCTTCGTTGGGGTTCCCTTTCACAAGTGCACAATGGAGGGAGCTTGAAAGACAAGCCATGATATACAAGTACATGATGGCTTCTGTTCCTGTTCCACACGATCTTCTCATCCCTACTTCACTCACACCCTCTTCACGCTCTGCCTGCAGTATGAATGACCCTTTGCTTTCTCTGGATGGTGGTTTCAATCTGAGGTTGGCTAGTGGCACTGACCCGGAGCCAGGTAGGTGTAGAAGAACAGATGGTAAAAAATGGAGATGTTCAAGAGATGTGGCTCCAAACCACAAGTACTGTGAGCGCCATATGCACAGAGGGCGTCCCCGTTCAAGAAAGCCTGTGGAAGTTAACACCAAGACCGCCACTCCCACTAGCATCAATAACAATAACCACCAAATCAAGAGGCCTCGCCATGAGTGCAATCCTTTTCCTTCCATACCTGATGTAACCGTGGCCATTTCTAACCCCACATCTAGAAAACATGGACCTTCACCCCATTTTCTTGGCTCTTCCACCACACTGCCGTACCTTGAATGCCCCCTTTCTCTTGCTAACTTTGGTTACAAAGCTGCAAATTTGGACTCCATGGCTTCTGTTTCTGCAAATAAGGAGCCCAGGGGTTTGGACTGGATGCTGAATGGAGATCCTATTTCCCTGGGTGCTTCCGACTCAGAATGGCAGTCTCTGATGCATCACAAAGTTGGACTGAGCAGTGAGAGTTCTTGTAACAATCCCCAGCCTCAGTACTTGAATTCATTTACAGTATACAACACTGGACTGGATCAACAGAACAGACGCCACCCTTTGTTCCTGAATCCTCTGGTTGTTCCTATGGAAAATCTCCAACCAGAGAAGCCAAGAGGTTTCATTGATGCTTGGTCCAACACAGAAAGTGGTGAAAACAATGCCCCCACCAACAGCAAGAACTCTGCTGCATCAATCGGTAAATTGACCCTTTCTTCTCTTGATCTATCAATGGGGGGTGGTGCCGTGAACGAAGATGTAGGTAATGTTAACATAGGGCTGGGCCTAATGGAGTCTATTGCAAACACACACACCGATACCAAAATCTCTCTGTCGAACTGGGTCAACCCTGCACCTTGGGTGGGTTCAACGCTTGGGGGTCCTCTGGCTGAAGTTCTAAGGTCAAGCACAGTGACTGCGACAACGAACGAAAGAACCTCAAACACACCCTCACCAGCCACCACACATGTGGAAAGTAACAGTCCTCTGGGAACAATGGTGTCGTCTCCATCTGGGGTGTTGCAGAAAACGCTTGTTTCATTGTCTGATAGCAGTAGCAATAGCAGCCCAAGGGTTGCATCATCAAGGGCGAATTCTGAGATGGCCCTGCTGAGGTTTCAACGAAATGTAAATTAA 1767 0.4793 MGEFGVPHMRKRSSSDNSGGSFVGLDVRVQSPEALFHNKMTMMAHHNHHHRPLSSPFDNDSCAGDGDGPTAYMSFTNHINLVSGASVLAPAIDGGCGAPAPVRTLQPFDISPYTSPTTTSSTFKLSGGMAASLGFPFTSAQWRELERQAMIYKYMMASVPVPHDLLIPTSLTPSSRSACSMNDPLLSLDGGFNLRLASGTDPEPGRCRRTDGKKWRCSRDVAPNHKYCERHMHRGRPRSRKPVEVNTKTATPTSINNNNHQIKRPRHECNPFPSIPDVTVAISNPTSRKHGPSPHFLGSSTTLPYLECPLSLANFGYKAANLDSMASVSANKEPRGLDWMLNGDPISLGASDSEWQSLMHHKVGLSSESSCNNPQPQYLNSFTVYNTGLDQQNRRHPLFLNPLVVPMENLQPEKPRGFIDAWSNTESGENNAPTNSKNSAASIGKLTLSSLDLSMGGGAVNEDVGNVNIGLGLMESIANTHTDTKISLSNWVNPAPWVGSTLGGPLAEVLRSSTVTATTNERTSNTPSPATTHVESNSPLGTMVSSPSGVLQKTLVSLSDSSSNSSPRVASSRANSEMALLRFQRNVN 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium652g00002 588 PANTHER GROWTH-REGULATING FACTOR 5 115 442 IPR031137 GO:0005634|GO:0006351|GO:0032502
Vium652g00002 588 MobiDBLite consensus disorder prediction 244 260 - -
Vium652g00002 588 MobiDBLite consensus disorder prediction 514 545 - -
Vium652g00002 588 MobiDBLite consensus disorder prediction 1 22 - -
Vium652g00002 588 Pfam WRC 202 244 IPR014977 -
Vium652g00002 588 ProSiteProfiles QLQ domain profile. 136 171 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vium652g00002 588 SMART QLQ_2 135 171 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vium652g00002 588 MobiDBLite consensus disorder prediction 233 264 - -
Vium652g00002 588 ProSiteProfiles WRC domain profile. 201 245 IPR014977 -
Vium652g00002 588 Pfam QLQ 136 168 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium652g00002 Vium-Chr652 4262 7282 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium652g00002 411 564 GRF Transcription Factor Family AT5G53660 34.524 2.14e-12 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Vium652g00002 WRC 6.4e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium652g00002 - - gmx:100803096 880.552