LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium6529g00004	ATGGCGTCGAGCGATCGCACAGTGTTACAATTCTCTTCATCTTCTCAAAGTTTCTCCGCGAAGGTTCACCCTCTCGTTATCTTTAATATCTGCGATTGCTACGTTCGGCGTCCTGACCAAGCCGACCGTGTCATCGGAACCCTACTCGGATCCGTCCTTCCGGATGGAACAGTAGATATTCGCAATTCCTATGCTGTTCCTCACAATGAGTCTATTGAGCAGGTTGCTCTGGATATAGAGTACCACCATAATATGTTAATATCCCACCAAAAAGTGAATCCAAAAGAAATCATAGTTGGATGGTATTCTACTGGTCTTGGAGTAACCGGTGGTAGTGCATTAATCCACGAGTTTTATTCTCGAGAAGTACAACATCCCATACATTTGACTGTTGATACTGGATTTACAAATGGAGGTGGTACCATCAAAGCATACGTGTCTAACAATTTATCCCTTGGAGAACGGCAAATTGCTGCACAGTTTCAAGAAATCCCATTAGATCTTCGTATGGTTGAAGCTGAGCGAATTGGATTTGATATGCTCAAGGCAACTGCAGTTGACAAAATTCCTTCAGATTTAGAAGGGATGGAAGCATCGATGCAACATCTACTAGTCTTGATTGATGATATCTACAAATATGTTGACGATGTTGTGGAAGGGCGAGTTGCACCTGACAACAAAATCGGGAGATTTATATCAGATGCTGTAGGTTCCCTTCCCAAAGTGTCTCCTCGAGTTTTTGATAAGCTTGTGAATGACAGCTTGCAGGATCACTTGCTTTTGCTATATTTATCTAGCATCACAAGAACGCAGCTGAGCTTGGCCGAGAAGTTGAACACAGCTGCCCAGATTCTGTGA	858	0.4312	MASSDRTVLQFSSSSQSFSAKVHPLVIFNICDCYVRRPDQADRVIGTLLGSVLPDGTVDIRNSYAVPHNESIEQVALDIEYHHNMLISHQKVNPKEIIVGWYSTGLGVTGGSALIHEFYSREVQHPIHLTVDTGFTNGGGTIKAYVSNNLSLGERQIAAQFQEIPLDLRMVEAERIGFDMLKATAVDKIPSDLEGMEASMQHLLVLIDDIYKYVDDVVEGRVAPDNKIGRFISDAVGSLPKVSPRVFDKLVNDSLQDHLLLLYLSSITRTQLSLAEKLNTAAQIL	285

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium6529g00004	285	Pfam	JAB1/Mov34/MPN/PAD-1 ubiquitin protease	20	122	IPR000555	GO:0005515\|GO:0008233\|GO:0008237
	Vium6529g00004	285	Hamap	Eukaryotic translation initiation factor 3 subunit F [EIF3F].	18	281	IPR027531	GO:0003743\|GO:0005852\|GO:0006413\|GO:0031369
	Vium6529g00004	285	Gene3D	Cytidine Deaminase, domain 2	7	186	-	-
	Vium6529g00004	285	SMART	pad1_6	19	150	IPR000555	GO:0005515\|GO:0008233\|GO:0008237
	Vium6529g00004	285	FunFam	Eukaryotic translation initiation factor 3 subunit F	8	186	-	-
	Vium6529g00004	285	CDD	MPN_eIF3f	21	278	IPR027531	GO:0003743\|GO:0005852\|GO:0006413\|GO:0031369
	Vium6529g00004	285	Pfam	Maintenance of mitochondrial structure and function	172	278	IPR024969	-
	Vium6529g00004	285	PANTHER	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED	12	282	-	-
	Vium6529g00004	285	ProSiteProfiles	MPN domain profile.	20	151	IPR037518	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium6529g00004	Vium-Chr6529	16828	20706	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium6529g00004	2	285	Eukaryotic Initiation Factors Gene Family	AT2G39990	74.914	2.74e-156	436

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium6529g00004	K03249		-	gmx:100811797	492.656