Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6529g00003 ATGGAAGAGGGCATGTCAGATTTTTGTTTTAGAGGTGAAAATGTTGGTGGTAATAGAGGTAGTGCCACTGGCACTAAGTGTGGGCGTTGGAATCCCACAACTGAACAGGCTAAGGTTCTGACTCAACTCTTCAGTTCTGGACTCCGCACTCCAAGCACTGATCAGATTCAAAAGATCTCTAACCAGCTCAGTTTTTATGGTAAGATTGAGAGCAAAAATGTCTTCTATTGGTTTCAGAACCATAAGGCTAGGGAAAGACAAAAGCGTCGCAAGGTTGATAAGGATGTCATTCGTAGTGAAAACTCCATCTCCATGAACTTTTTCACGCAAAATATTACGCAGCTTTATGACGATTCTGAGCCTGAGAAAGTGACTGAGACTCTTCAACTATTCCCCCTGAACTCTTTCGGTGAATCAGAATCAAAGAATATGAAGGTTCATGCAAGTGACTGCAGGGATACTACAATGTTTTCATTCACAGAGGAGGAACAAATGAACCATCCACCATTAGATCTTCGCTTGAGTTTTATGTGA 534 0.4176 MEEGMSDFCFRGENVGGNRGSATGTKCGRWNPTTEQAKVLTQLFSSGLRTPSTDQIQKISNQLSFYGKIESKNVFYWFQNHKARERQKRRKVDKDVIRSENSISMNFFTQNITQLYDDSEPEKVTETLQLFPLNSFGESESKNMKVHASDCRDTTMFSFTEEEQMNHPPLDLRLSFM 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6529g00003 177 SMART HOX_1 25 92 IPR001356 GO:0003677
Vium6529g00003 177 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 16 99 IPR044555 GO:0003700|GO:0099402
Vium6529g00003 177 Pfam Homeodomain 27 87 IPR001356 GO:0003677
Vium6529g00003 177 FunFam WUSCHEL-related homeobox 11 26 94 - -
Vium6529g00003 177 CDD homeodomain 29 89 IPR001356 GO:0003677
Vium6529g00003 177 Gene3D - 26 93 - -
Vium6529g00003 177 SUPERFAMILY Homeodomain-like 28 90 IPR009057 -
Vium6529g00003 177 ProSiteProfiles 'Homeobox' domain profile. 23 88 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6529g00003 Vium-Chr6529 11369 12393 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6529g00003 8 177 Wox Gene Family AT3G11260 55.978 1.06e-60 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vium6529g00003 Homeodomain 6.4e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6529g00003 - - gmx:100791433 307.375