Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6529g00002 ATGGACGTGATAAAGACGCAGCAAATCTCATCTCGACCAATCGAGAAGGTCGTGGTTCATCCGCTCGTGCTTCTTAGCATCGTCGACAACTACAATAGAGTCGCCAAGGACACGCGCAAGCGCGTCGTCGGCGTTTTGCTTGGCTCATCTTTCAAAGGCACCGTCGACGTTACCAACAGCTACGCCGTGCCGTTTGAAGAAGATGACAAGGATCCGAGCATCTGGTTTCTTGACCACAATTACCATGAATCAATGTTTTCCATGTTTAAAAGAATAAATGCAAAGGAGCATGTTGTGGGGTGGTATAGCACAGGTCCAAAGCTGCGTGAAAATGACCTTGACATTCATGGCTTATTTAATGATTATGTTCCAAATCCTGTCTTGGTTATCATTGATGTTGAACCCAAGGAATTGGGAATCCCAACAAAAGCATATTACGCTGTAGAAGAGGTTAAAGAGAATGCCACCCAAAAAAGCCAAAAGGTCTTTGTTCATGTGCCATCCGAGATTGCAGCTCATGAAGTTGAAGAAATAGGAGTCGAACATTTACTTAGAGATGTAAAGGATACAACCATTAGCACCCTTGCGACCGAGGTAAGTGCAAAACTTACAGCCTTGAAGGGTTTGGATGCTAGACTTAAAGAGATAAGGAGTTACCTTGACCTGGTTATTGATGGAAAGCTTCCCTTAAACCATGAGATCCTGTACCATCTGCAGGACGTGTTTAACCTGCTACCAAATCTTAATGTGGCTGATCTTATCAAGGCGTTTGCAGTGAAAACCAATGATATGATGCTGGTAATATACCTATCGTCTCTCATTAGAAGTGTAATTGCACTCCACAACTTGATTAACAACAAGATGCTTAACAAAGAACATGAACGGGCAGAAGACTCAAAGTCAGTTACAGTGCCTAGTGCAGCTGCATAA 930 0.4323 MDVIKTQQISSRPIEKVVVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVTNSYAVPFEEDDKDPSIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLRENDLDIHGLFNDYVPNPVLVIIDVEPKELGIPTKAYYAVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLATEVSAKLTALKGLDARLKEIRSYLDLVIDGKLPLNHEILYHLQDVFNLLPNLNVADLIKAFAVKTNDMMLVIYLSSLIRSVIALHNLINNKMLNKEHERAEDSKSVTVPSAAA 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6529g00002 309 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 13 290 - -
Vium6529g00002 309 SMART pad1_6 16 150 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vium6529g00002 309 CDD MPN_RPN7_8 15 295 IPR033858 GO:0005838
Vium6529g00002 309 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 15 124 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vium6529g00002 309 Gene3D Cytidine Deaminase, domain 2 9 194 - -
Vium6529g00002 309 FunFam 26S proteasome non-ATPase regulatory subunit 7 9 194 - -
Vium6529g00002 309 Pfam Maintenance of mitochondrial structure and function 174 285 IPR024969 -
Vium6529g00002 309 ProSiteProfiles MPN domain profile. 17 154 IPR037518 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6529g00002 Vium-Chr6529 6610 10728 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6529g00002 19 248 Eukaryotic Initiation Factors Gene Family AT2G39990 29.060 3.06e-26 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6529g00002 K03038 - gmx:100790393 606.29