Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6529g00001 ATGAGTTCTTCTTATACTTCTGTGTGTGAAGAAATGGCTGTCATATCAAAATGCACTGTTGTGCCTCACCAAAACTCCACTCTCGGAGACCTAAAGCTCTCCATCTCAGACCTTAACATGTTTTTGGCTCACTACATCCAAAAGGGCTGTCTCTTCACCACCCCATCTCACCCCTCTCACACTCTCATCCCTCACCTCACCAACGCGCTTTCTCGCACGCTCTCAATTTTTCCTCCTTTAGCTGGCCGATTCATAACCAATGCCCACGGCCACGTCTATATCGCATGCAACGACGCTGGCGTTGACTTCATCCACGCCACCGCCACCAATCTCTCTGTCACCGACCTCCTGTCGCCGTCCGATGTCCACTCGGCCTTTAAGAAATTCTTCCCTTTCCACCACAAACTCAGTTACACCGCCCATTCCTCCCCCATCATGGCCATTCAGGTCACTGAACTCGCAGACGGTATTTTCATCGGTTGCGCCGTCTGCCATGCTGTTACCGACGGCTCCTCCTTTTGGAACTTCTTCAACACCTTTTCTGCGGTTTCTCGAGGACTCATATGTCCCTCTAGGCTCCCGGATTTTCACCGGGAATCAATCCTCATGTCGAAAGTCGTTCTTCGATTGCCCCAAGTAGAAATGAAGGTCACCTTCGATGTTGACTCGCCCTTTCGAGAGAGAATCTTCAGTTTCAGCCGTGAATCGATCCAGAAGTTGAAAGGCTCGGTGAACAACAGTAGGAAAATATTTGGAGCAGAGAAGGAGGAGGTGGACGTTGAGTTAATGGCGAAGCTGAGCAATGACACAGCATTGAAAAAGGTCGCAGTGGGCGAAACGACAGAGATCTCTTCGTTTCAGGCCTTATGCGCACTGATGTGGCGTTGCGTGACTAGAGCAAGGAATTTGGAGAAGGGTAAAACGACGACGCTCCGAATGGCAGTTAATGTTCGGCAACGTTTGGAGCCTAAGTTGGGGGATTGTTACTTCGGGAATGCGATTCAAAGCATCGTGACGCATGCAGTAGTTGGTGACGTGGTGTCCATGGACCTTGGCTGGTGTGCGGAACAGGTGCACAAGAGCGTGACGGCGTTCAGTAGTGATACGGTGCGTCGTAACGTGGAGAATTGGGAGCGTGAGCCGAAGTGCTTCGAGTTAGGGAACCATGACGGTGCCACCGTGCAGATGGGAAGCTCTCCAAGATTTCCGATGTACGACAACGATTTCGGGTGGGGACGGCCATTGGCCGTGCGAAGTGGTGGAGCTAACAAGTTCGATGGAAAACTGTCGGCGTTTCCCGGGAGAAATGGCGGTGGCAGCACCGATTTGGAAGTGGTTTTGGCGCCTGAGACGATGGCGCGTCTGGAGTCTGATCCTGAGTTTATGATTTATGTGTGTGGATAA 1404 0.515 MSSSYTSVCEEMAVISKCTVVPHQNSTLGDLKLSISDLNMFLAHYIQKGCLFTTPSHPSHTLIPHLTNALSRTLSIFPPLAGRFITNAHGHVYIACNDAGVDFIHATATNLSVTDLLSPSDVHSAFKKFFPFHHKLSYTAHSSPIMAIQVTELADGIFIGCAVCHAVTDGSSFWNFFNTFSAVSRGLICPSRLPDFHRESILMSKVVLRLPQVEMKVTFDVDSPFRERIFSFSRESIQKLKGSVNNSRKIFGAEKEEVDVELMAKLSNDTALKKVAVGETTEISSFQALCALMWRCVTRARNLEKGKTTTLRMAVNVRQRLEPKLGDCYFGNAIQSIVTHAVVGDVVSMDLGWCAEQVHKSVTAFSSDTVRRNVENWEREPKCFELGNHDGATVQMGSSPRFPMYDNDFGWGRPLAVRSGGANKFDGKLSAFPGRNGGGSTDLEVVLAPETMARLESDPEFMIYVCG 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6529g00001 467 Gene3D - 12 214 IPR023213 -
Vium6529g00001 467 Pfam Transferase family 14 462 - -
Vium6529g00001 467 Gene3D - 215 457 IPR023213 -
Vium6529g00001 467 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 14 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6529g00001 Vium-Chr6529 1507 3487 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6529g00001 36 456 Monolignol Biosynthesis Gene Families AT5G48930 28.604 1.19e-41 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6529g00001 - - vum:124828482 709.523